Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 0.0e+00 1116.7 632 100.0
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 6.7e-247 857.4 691 77.9
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.5e-214 750.0 675 66.1
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.3e-210 736.9 697 64.0
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.6e-206 722.6 702 62.7
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 4.6e-195 685.3 610 64.9
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 9.5e-193 677.6 698 60.3
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.5e-190 667.9 704 59.2
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 4.9e-189 665.2 603 64.2
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.0e-182 643.3 619 61.6
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 3.4e-182 642.5 616 61.0
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 3.4e-182 642.5 702 58.3
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 9.9e-182 641.0 649 60.1
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.2e-181 639.8 663 59.3
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.2e-181 639.8 615 61.3
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 3.8e-181 639.0 603 62.7
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.1e-180 637.5 594 62.5
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.2e-180 636.0 602 60.3
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 9.2e-180 634.4 596 62.4
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.3e-178 630.6 698 55.4
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.7e-178 630.2 612 61.4
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 6.6e-178 628.2 720 55.0
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 8.6e-178 627.9 720 54.9
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.3e-177 625.5 720 55.0
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 4.3e-177 625.5 697 57.0
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 5.6e-177 625.2 609 59.9
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 5.6e-177 625.2 701 54.5
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 9.6e-177 624.4 700 56.0
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.6e-176 623.6 616 61.2
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 3.6e-176 622.5 588 62.4
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 6.9e-175 618.2 651 57.3
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.5e-174 617.1 582 61.3
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.5e-174 617.1 584 60.4
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 2.0e-174 616.7 566 62.9
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.0e-174 616.7 638 57.2
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 4.4e-174 615.5 603 60.2
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 4.9e-173 612.1 620 58.4
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.9e-173 612.1 603 58.7
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 4.9e-173 612.1 588 60.7
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.4e-173 611.3 607 60.5
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 8.4e-173 611.3 596 59.4
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.1e-172 610.9 607 60.5
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.4e-172 609.8 613 59.2
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 3.2e-172 609.4 603 60.7
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 5.4e-172 608.6 613 59.1
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 5.4e-172 608.6 585 62.9
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 9.3e-172 607.8 607 58.6
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.2e-171 607.4 609 60.1
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 3.5e-171 605.9 610 58.4
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 7.8e-171 604.7 624 58.3
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.3e-170 604.0 579 60.6
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.3e-170 603.2 582 59.8
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 5.1e-170 602.1 692 54.3
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.5e-169 600.5 596 59.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.8e-168 596.3 689 54.4
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.1e-167 594.3 584 59.2
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.4e-167 594.0 610 57.9
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.3e-167 592.0 605 58.5
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 5.8e-166 588.6 567 59.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 9.9e-166 587.8 707 54.0
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 3.8e-165 585.9 635 55.6
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.4e-164 583.9 589 58.2
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.4e-164 583.9 600 58.3
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 2.4e-164 583.2 592 58.4
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 2.7e-163 579.7 603 59.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 7.9e-163 578.2 582 59.8
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.3e-162 577.4 590 58.3
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.3e-162 576.6 576 58.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.3e-162 576.6 612 56.7
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 5.1e-162 575.5 578 58.8
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 8.7e-162 574.7 601 57.4
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 3.3e-161 572.8 644 58.5
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 4.3e-161 572.4 612 57.2
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 7.4e-161 571.6 650 54.6
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.8e-160 569.7 580 58.3
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 2.8e-160 569.7 593 57.7
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 3.7e-160 569.3 584 58.0
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 3.7e-160 569.3 584 58.0
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 4.8e-160 568.9 603 56.6
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 6.2e-160 568.5 593 57.5
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.4e-159 567.4 614 55.5
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-159 567.0 583 58.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.4e-159 566.6 593 57.5
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 4.0e-159 565.8 599 56.9
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 5.3e-159 565.5 601 56.6
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.6e-158 563.1 590 58.1
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.4e-156 557.4 596 56.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.9e-156 557.0 612 55.7
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 3.9e-154 549.3 604 55.5
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 6.7e-154 548.5 581 55.1
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 6.7e-154 548.5 613 54.8
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 1.1e-151 541.2 541 58.6
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 7.6e-150 535.0 620 55.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 7.4e-145 518.5 570 55.1
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.5e-142 510.8 575 54.8
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 3.8e-141 506.1 630 54.0
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 2.5e-140 503.4 615 52.2
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.2e-140 503.1 509 58.2
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 3.3e-137 493.0 607 50.7
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.0e-122 444.9 627 46.7
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 9.7e-121 438.3 456 61.4
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.0e-109 401.7 545 47.5
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 2.1e-107 394.0 578 42.0
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.5e-105 387.9 327 66.7
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 5.4e-103 379.4 626 43.0
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.7e-101 374.4 517 47.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 3.7e-96 356.7 633 38.7
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.0e-93 348.6 498 47.0
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 9.8e-89 332.0 617 39.5
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 6.2e-83 312.8 323 59.4
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.4e-79 301.6 316 55.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 3.2e-79 300.4 241 69.3
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.9e-72 277.3 276 59.4
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.9e-69 266.9 643 31.7
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.8e-64 250.4 256 59.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 3.3e-60 237.3 252 54.0
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.1e-58 230.7 387 42.1
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 6.6e-53 213.0 150 73.3
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.4e-42 178.7 177 62.1
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 9.9e-41 172.6 591 32.5
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 2.2e-40 171.4 685 24.5
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 2.2e-40 171.4 511 29.5
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.9e-36 158.3 222 47.3
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 6.2e-35 153.3 222 47.3
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 2.0e-33 148.3 104 68.3
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.8e-32 144.1 156 53.8
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.9e-31 141.7 129 59.7
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.2e-30 139.0 123 61.0
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.6e-30 138.7 129 58.9
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 7.9e-30 136.3 140 52.1
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 4.3e-28 130.6 270 33.7
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 9.7e-28 129.4 168 48.8
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.1e-26 125.9 648 24.8
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 3.1e-26 124.4 99 67.7
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 2.4e-18 98.2 141 43.3
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 3.1e-18 97.8 98 51.0
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 1.4e-13 82.4 86 58.1
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.8e-13 82.0 79 60.8
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 5.7e-12 77.0 120 40.8
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 2.4e-10 71.6 101 48.5
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.8e-08 64.3 107 43.9
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.4e-07 62.4 74 45.9
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.4e-07 62.4 74 45.9
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 3.2e-07 61.2 74 44.6
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 4.2e-07 60.8 41 65.9
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 4.2e-07 60.8 74 44.6
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 4.2e-07 60.8 74 44.6
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 4.2e-07 60.8 74 44.6
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 7.2e-07 60.1 52 53.8
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 7.2e-07 60.1 52 53.8


User provided reference genes

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