Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.6e-49 197.6 100 100.0
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.3e-16 89.0 45 95.6
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 1.3e-11 73.2 41 85.4
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.3e-11 73.2 61 62.3
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.7e-11 72.8 43 81.4
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 2.2e-11 72.4 61 60.7
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 4.9e-11 71.2 48 72.9
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.9e-10 69.3 43 79.1
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 1.9e-10 69.3 41 80.5
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 1.9e-10 69.3 43 79.1
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.5e-10 68.9 43 76.7
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 2.5e-10 68.9 43 79.1
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 2.5e-10 68.9 43 76.7
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 3.2e-10 68.6 43 76.7
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 4.2e-10 68.2 43 74.4
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 4.2e-10 68.2 43 74.4
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 5.5e-10 67.8 43 74.4
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 5.5e-10 67.8 45 77.8
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 9.3e-10 67.0 40 77.5
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 1.2e-09 66.6 43 79.1
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 1.2e-09 66.6 40 77.5
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 2.1e-09 65.9 40 77.5
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 2.1e-09 65.9 40 77.5
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.1e-09 65.9 43 72.1
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 2.1e-09 65.9 43 72.1
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 2.1e-09 65.9 44 70.5
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.1e-09 65.9 43 72.1
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 74.4
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 72.1
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 72.1
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 72.1
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 72.1
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 74.4
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 74.4
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 74.4
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 2.7e-09 65.5 40 77.5
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 2.7e-09 65.5 43 74.4
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 3.5e-09 65.1 44 65.9
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 3.5e-09 65.1 40 75.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 3.5e-09 65.1 43 74.4
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 3.5e-09 65.1 43 74.4
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 4.6e-09 64.7 40 72.5
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 7.9e-09 63.9 43 72.1
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 7.9e-09 63.9 43 74.4
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 7.9e-09 63.9 43 67.4
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.0e-08 63.5 43 72.1
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 1.0e-08 63.5 44 68.2
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.0e-08 63.5 43 69.8
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 1.0e-08 63.5 43 67.4
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.3e-08 63.2 45 66.7
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.8e-08 62.8 40 72.5
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.8e-08 62.8 45 73.3
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 1.8e-08 62.8 43 69.8
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 1.8e-08 62.8 40 72.5
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.8e-08 62.8 40 72.5
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.8e-08 62.8 41 78.0
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 2.3e-08 62.4 40 72.5
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 2.3e-08 62.4 40 72.5
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 2.3e-08 62.4 43 67.4
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 2.3e-08 62.4 43 69.8
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 2.3e-08 62.4 40 70.0
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 3.0e-08 62.0 40 72.5
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 3.0e-08 62.0 43 67.4
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 3.9e-08 61.6 40 70.0
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 5.1e-08 61.2 40 67.5
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 5.1e-08 61.2 43 69.8
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 5.1e-08 61.2 40 72.5
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 5.1e-08 61.2 40 70.0
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 5.1e-08 61.2 40 70.0
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 5.1e-08 61.2 76 47.4
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 6.7e-08 60.8 43 74.4
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 8.7e-08 60.5 40 70.0
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 8.7e-08 60.5 43 65.1
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.1e-07 60.1 43 69.8
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.1e-07 60.1 43 67.4
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 1.5e-07 59.7 61 50.8
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.9e-07 59.3 43 62.8
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 1.9e-07 59.3 40 70.0
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.9e-07 59.3 43 62.8
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.9e-07 59.3 43 67.4
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 2.5e-07 58.9 43 62.8
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 2.5e-07 58.9 43 62.8
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 2.5e-07 58.9 41 65.9
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 2.5e-07 58.9 43 62.8
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 3.3e-07 58.5 43 65.1
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-07 58.2 43 65.1
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-07 58.2 43 65.1
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 4.3e-07 58.2 43 65.1
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 4.3e-07 58.2 43 65.1
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 4.3e-07 58.2 43 65.1
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 4.3e-07 58.2 43 65.1
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 4.3e-07 58.2 61 49.2
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 4.3e-07 58.2 43 65.1
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 5.7e-07 57.8 43 60.5
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 5.7e-07 57.8 43 60.5
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 7.4e-07 57.4 40 62.5
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 7.4e-07 57.4 43 62.8
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 7.4e-07 57.4 40 67.5
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 7.4e-07 57.4 43 65.1
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.3e-06 56.6 40 62.5
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.6e-06 56.2 43 65.1
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.6e-06 56.2 43 60.5
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 2.1e-06 55.8 61 47.5
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 2.8e-06 55.5 43 60.5
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 2.8e-06 55.5 43 60.5
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 8.2e-06 53.9 41 63.4


User provided reference genes

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