Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 6.4e-171 604.0 303 100.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.5e-151 538.9 306 89.5
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.8e-150 535.4 305 89.2
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.8e-142 508.8 303 82.8
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 2.4e-141 505.8 322 81.7
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 2.6e-140 502.3 304 83.2
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.9e-139 498.8 303 81.8
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.4e-138 496.5 304 81.6
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.2e-138 495.4 305 82.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.2e-137 493.4 305 82.3
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.6e-137 493.0 304 81.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 2.7e-137 492.3 305 82.3
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.6e-137 491.9 304 81.2
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 6.1e-137 491.1 307 79.8
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 6.1e-137 491.1 358 73.5
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.3e-136 490.0 304 80.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 3.0e-136 488.8 305 81.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 8.7e-136 487.3 303 80.9
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.8e-134 482.3 304 79.9
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.8e-133 479.6 303 80.5
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.1e-133 478.8 303 77.6
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.5e-132 476.5 304 78.6
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 3.4e-132 475.3 305 77.4
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 4.5e-132 474.9 303 76.9
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.3e-131 473.4 306 77.5
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.7e-131 473.0 325 74.5
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 3.8e-131 471.9 268 87.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 6.5e-131 471.1 304 77.6
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 6.5e-131 471.1 305 77.0
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.5e-130 469.2 306 78.8
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 3.2e-130 468.8 303 75.6
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 4.2e-130 468.4 310 77.7
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 4.2e-130 468.4 303 76.6
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 5.5e-130 468.0 342 71.9
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.5e-130 468.0 307 78.5
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 7.2e-130 467.6 304 78.0
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.6e-129 466.5 304 76.3
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.6e-129 466.5 303 76.6
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.6e-129 466.5 303 76.6
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.1e-129 466.1 304 77.3
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.7e-129 465.7 303 74.6
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.6e-129 465.3 303 76.2
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.6e-129 464.9 283 79.9
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 4.6e-129 464.9 304 77.3
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 6.1e-129 464.5 308 75.3
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.4e-128 463.4 304 77.3
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.8e-128 463.0 308 72.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.1e-127 460.3 276 83.0
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.1e-127 460.3 305 75.1
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 3.3e-127 458.8 311 74.6
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 7.4e-127 457.6 304 75.0
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 9.7e-127 457.2 269 84.8
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.8e-126 455.7 276 78.6
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 3.7e-126 455.3 303 74.3
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 6.3e-126 454.5 303 74.9
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.4e-125 453.4 312 73.7
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.1e-125 452.2 286 80.4
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.2e-124 450.3 317 71.9
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 4.5e-124 448.4 299 74.6
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 4.5e-124 448.4 303 72.9
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.2e-123 446.0 307 74.3
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.2e-123 446.0 315 72.1
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 2.2e-123 446.0 277 76.9
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 8.5e-123 444.1 285 78.9
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.1e-122 443.7 268 81.3
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.9e-122 443.0 303 72.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.7e-121 439.1 279 76.7
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 3.0e-120 435.6 296 74.7
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 3.9e-120 435.3 295 72.5
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.3e-119 432.2 305 73.8
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 7.4e-119 431.0 304 71.1
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 9.7e-119 430.6 305 70.8
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 2.8e-118 429.1 303 71.0
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 6.3e-118 427.9 304 71.1
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.8e-117 426.4 303 71.0
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 4.1e-117 425.2 304 71.4
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.2e-116 423.7 305 70.8
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.6e-116 422.5 313 69.0
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 3.5e-116 422.2 303 70.0
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.0e-115 420.6 303 68.3
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 1.7e-115 419.9 305 70.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.5e-114 416.0 285 71.6
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.2e-114 415.2 311 69.1
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 7.2e-114 414.5 285 71.6
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.6e-113 413.3 311 68.5
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 8.0e-113 411.0 311 67.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 6.7e-112 407.9 281 72.6
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.4e-111 405.2 293 72.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 6.3e-110 401.4 262 72.9
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.1e-109 399.1 281 70.1
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 5.3e-109 398.3 295 70.2
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 9.1e-109 397.5 336 63.1
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-108 397.1 261 75.1
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 2.0e-108 396.4 336 63.4
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 6.8e-104 381.3 336 62.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.5e-103 380.2 285 66.0
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 5.7e-103 378.3 286 65.7
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.8e-101 373.2 264 72.3
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.4e-101 371.7 268 68.7
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 5.9e-100 368.2 306 68.3
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 5.9e-100 368.2 262 73.3
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.0e-99 367.5 217 85.7
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.5e-98 363.6 259 70.7
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 2.5e-98 362.8 263 71.1
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 9.5e-98 360.9 259 70.7
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 5.2e-96 355.1 251 71.7
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 5.7e-95 351.7 261 67.0
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.3e-94 350.5 273 63.7
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-93 347.1 259 68.3
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 3.5e-92 342.4 249 71.1
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 7.3e-90 334.7 248 66.1
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 2.8e-89 332.8 215 78.6
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 6.1e-89 331.6 248 65.3
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.6e-87 326.2 271 60.5
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 4.4e-87 325.5 257 67.7
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.4e-87 325.5 202 77.2
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.2e-85 319.3 269 61.3
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.6e-82 308.5 225 67.1
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 8.9e-80 301.2 248 61.7
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 3.3e-74 282.7 219 65.3
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.3e-62 244.2 304 43.4
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 6.4e-62 241.9 286 49.0
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.7e-60 236.5 249 53.0
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 6.6e-51 205.3 121 81.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 6.6e-51 205.3 120 80.0
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.4e-48 197.6 158 65.2
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 3.8e-46 189.5 120 75.0
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 1.9e-45 187.2 270 40.7
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 2.1e-44 183.7 265 40.0
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.1e-37 161.4 118 66.1
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-36 156.0 142 58.5
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.1e-34 151.4 88 83.0
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 5.8e-31 139.0 83 78.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 5.1e-27 125.9 91 69.2
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 5.7e-26 122.5 109 60.6
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 5.3e-24 115.9 75 74.7
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 1.0e-22 111.7 287 28.9
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.0e-19 101.7 263 29.7
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.0e-19 101.7 317 27.1
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.1e-18 98.2 153 43.1
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 4.3e-18 96.3 292 29.1
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 5.7e-18 95.9 109 50.5
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.7e-17 94.4 61 70.5
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 5.9e-15 85.9 79 55.7
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.0e-14 85.1 87 56.3
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.7e-14 84.3 204 27.5
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 2.5e-13 80.5 87 47.1
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 3.2e-13 80.1 316 25.6
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 4.2e-13 79.7 316 25.6
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.5e-13 79.3 51 68.6
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.1e-10 71.6 47 68.1
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.3e-09 68.2 63 55.6
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.1e-08 65.1 41 73.2
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 2.4e-08 63.9 232 22.8
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 3.4e-07 60.1 87 44.8


User provided reference genes

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