Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 3.0e-54 214.9 109 100.0
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 3.5e-26 121.7 65 90.8
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.0e-17 93.6 50 88.0
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 4.3e-16 88.2 58 77.6
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 5.6e-16 87.8 46 91.3
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.2e-15 86.7 56 75.0
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.2e-15 86.7 50 84.0
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.6e-15 86.3 48 87.5
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 2.1e-15 85.9 46 91.3
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 2.1e-15 85.9 51 82.4
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 2.1e-15 85.9 51 82.4
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 2.8e-15 85.5 51 80.4
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.8e-15 85.5 58 74.1
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 2.8e-15 85.5 46 87.0
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 3.6e-15 85.1 58 74.1
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.6e-15 85.1 58 72.4
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 3.6e-15 85.1 44 88.6
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 4.7e-15 84.7 48 85.4
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 4.7e-15 84.7 46 89.1
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.7e-15 84.7 49 85.7
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 6.1e-15 84.3 60 73.3
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 6.1e-15 84.3 54 75.9
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 6.1e-15 84.3 46 87.0
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 8.0e-15 84.0 48 83.3
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 8.0e-15 84.0 57 70.2
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 8.0e-15 84.0 58 70.7
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.0e-14 83.6 51 78.4
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 1.4e-14 83.2 48 79.2
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.4e-14 83.2 48 79.2
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.8e-14 82.8 46 84.8
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.8e-14 82.8 52 78.8
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 3.0e-14 82.0 53 73.6
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 4.0e-14 81.6 58 70.7
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 5.2e-14 81.3 48 81.2
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 2.0e-13 79.3 48 79.2
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 2.0e-13 79.3 56 71.4
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 2.0e-13 79.3 48 79.2
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 2.6e-13 79.0 53 73.6
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.6e-13 79.0 46 84.8
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 2.6e-13 79.0 46 84.8
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 3.4e-13 78.6 44 86.4
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 3.4e-13 78.6 48 79.2
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 5.8e-13 77.8 40 90.0
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 5.8e-13 77.8 40 90.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 5.8e-13 77.8 61 65.6
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 5.8e-13 77.8 53 71.7
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.7e-12 76.3 48 75.0
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 2.2e-12 75.9 49 73.5
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.2e-12 75.9 52 69.2
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 2.9e-12 75.5 54 72.2
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.9e-12 75.5 48 77.1
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 3.7e-12 75.1 57 63.2
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 3.7e-12 75.1 49 71.4
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.7e-12 75.1 48 75.0
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 3.7e-12 75.1 51 70.6
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 4.9e-12 74.7 42 81.0
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 4.9e-12 74.7 53 66.0
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 8.3e-12 73.9 43 81.4
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.1e-11 73.6 58 63.8
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.9e-11 72.8 37 89.2
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 1.9e-11 72.8 44 77.3
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 2.4e-11 72.4 44 75.0
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 5.4e-11 71.2 48 70.8
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 5.4e-11 71.2 48 70.8
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 7.0e-11 70.9 47 70.2
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 7.0e-11 70.9 48 70.8
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 9.2e-11 70.5 48 72.9
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 9.2e-11 70.5 48 72.9
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 1.2e-10 70.1 37 83.8
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.2e-10 70.1 46 71.7
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.2e-10 70.1 41 75.6
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.6e-10 69.7 47 70.2
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.6e-10 69.7 47 70.2
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.6e-10 69.7 47 70.2
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.6e-10 69.7 37 81.1
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.0e-10 69.3 42 76.2
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 2.0e-10 69.3 39 76.9
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 2.7e-10 68.9 49 65.3
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 4.6e-10 68.2 42 76.2
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 4.6e-10 68.2 39 82.1
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 7.8e-10 67.4 52 69.2
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 7.8e-10 67.4 46 63.0
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 1.3e-09 66.6 36 86.1
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 1.7e-09 66.2 48 66.7
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 5.0e-09 64.7 39 76.9
Ca_31270_v3 Cicer arietinum L. HOM05D006175 ORTHO05D043346 6.6e-09 64.3 74 52.7
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 6.6e-09 64.3 58 50.0
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 7.3e-08 60.8 37 73.0
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.1e-06 57.0 33 72.7
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.8e-06 56.2 48 50.0
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 8.9e-06 53.9 52 46.2


User provided reference genes

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