Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024290 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 3.3e-44 181.4 97 100.0
CSS0039181 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 3.3e-44 181.4 97 100.0
Lj5C37T8 Lonicera japonica HOM05D002498 ORTHO05D002553 1.6e-19 99.4 74 77.0
TAR636G1942 Trochodendron aralioides HOM05D002498 ORTHO05D002553 2.1e-19 99.0 81 70.4
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 2.8e-19 98.6 76 77.6
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 2.8e-19 98.6 76 77.6
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 1.1e-18 96.7 81 67.9
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 1.8e-18 95.9 77 68.8
Lsat_1_v5_gn_1_38060 Lactuca sativa HOM05D002498 ORTHO05D002553 6.9e-18 94.0 79 73.4
CAN.G862.29 Capsicum annuum HOM05D002498 ORTHO05D002553 1.2e-17 93.2 81 65.4
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 2.0e-17 92.4 79 68.4
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 2.0e-17 92.4 75 70.7
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 4.5e-17 91.3 74 71.6
Atru.chr1.3950 Acer truncatum HOM05D002498 ORTHO05D002553 5.8e-17 90.9 74 73.0
DCAR_016127 Daucus carota HOM05D002498 ORTHO05D002553 7.6e-17 90.5 82 64.6
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 7.6e-17 90.5 77 70.1
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 1.0e-16 90.1 72 72.2
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 3.8e-16 88.2 72 72.2
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 6.5e-16 87.4 77 70.1
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 6.5e-16 87.4 77 70.1
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 6.5e-16 87.4 83 62.7
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 6.5e-16 87.4 81 61.7
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 8.4e-16 87.0 77 70.1
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 8.4e-16 87.0 77 70.1
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 8.4e-16 87.0 83 62.7
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 3.2e-15 85.1 77 72.7
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 3.2e-15 85.1 77 71.4
Sabra01G0141500 Salix brachista HOM05D002498 ORTHO05D002553 4.2e-15 84.7 72 66.7
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 5.5e-15 84.3 80 66.2
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 7.1e-15 84.0 77 71.4
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 7.1e-15 84.0 77 71.4
Carub.0001s1720 Capsella rubella HOM05D002498 ORTHO05D002553 7.1e-15 84.0 77 71.4
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 9.3e-15 83.6 74 64.9
Aa31LG4G2990 Aethionema arabicum HOM05D002498 ORTHO05D002553 1.2e-14 83.2 77 68.8
Solyc03g122020.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 1.2e-14 83.2 81 64.2
Sopen03g040820 Solanum pennellii HOM05D002498 ORTHO05D002553 1.2e-14 83.2 81 64.2
BcaNung06974 Brassica carinata HOM05D002498 ORTHO05D002553 1.6e-14 82.8 77 67.5
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 1.6e-14 82.8 80 63.8
Peaxi162Scf00038g01936 Petunia axillaris HOM05D002498 ORTHO05D002553 2.1e-14 82.4 83 60.2
THA.LOC104808053 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 2.1e-14 82.4 77 70.1
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 2.7e-14 82.0 73 69.9
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 2.7e-14 82.0 73 69.9
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 2.7e-14 82.0 73 69.9
MSTRG.14437 Avicennia marina HOM05D002498 ORTHO05D002553 6.0e-14 80.9 74 64.9
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 6.0e-14 80.9 74 63.5
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 6.0e-14 80.9 81 63.0
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 7.9e-14 80.5 73 67.1
PGR119G0909 Punica granatum HOM05D002498 ORTHO05D002553 1.0e-13 80.1 74 64.9
Sabra03G0037700 Salix brachista HOM05D002498 ORTHO05D002553 1.3e-13 79.7 72 66.7
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 1.8e-13 79.3 77 61.0
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 3.0e-13 78.6 73 67.1
SGA_v2.0_scaffold71G23856 Striga asiatica HOM05D002498 ORTHO05D002553 3.0e-13 78.6 73 65.8
ECA247G3107 Erigeron canadensis HOM05D002498 ORTHO05D002553 3.9e-13 78.2 81 63.0
HanXRQChr04g0094561 Helianthus annuus HOM05D002498 ORTHO05D002553 3.9e-13 78.2 77 64.9
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 3.9e-13 78.2 71 69.0
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 5.1e-13 77.8 76 68.4
CiPaw.01G219200 Carya illinoinensis HOM05D002498 ORTHO05D002553 6.7e-13 77.4 81 60.5
FvH4_6g34640 Fragaria vesca HOM05D002498 ORTHO05D002553 8.7e-13 77.0 84 60.7
FAN09G3304 Fragaria x ananassa HOM05D002498 ORTHO05D002553 8.7e-13 77.0 84 60.7
FAN14G0943 Fragaria x ananassa HOM05D002498 ORTHO05D002553 8.7e-13 77.0 84 60.7
Sed0015077 Sechium edule HOM05D002498 ORTHO05D002553 8.7e-13 77.0 72 65.3
Oeu007562.1 Olea europaea HOM05D002498 ORTHO05D002553 1.1e-12 76.6 75 64.0
Aqoxy1G00838 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 1.5e-12 76.3 77 61.0
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.5e-12 76.3 73 65.8
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.5e-12 76.3 73 65.8
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 1.5e-12 76.3 73 65.8
ClCG09G000950 Citrullus lanatus HOM05D002498 ORTHO05D002553 2.5e-12 75.5 72 62.5
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.5e-12 75.5 84 59.5
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 2.5e-12 75.5 84 59.5
MELO3C024357.2 Cucumis melo HOM05D002498 ORTHO05D002553 3.3e-12 75.1 72 62.5
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 3.3e-12 75.1 72 62.5
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 3.3e-12 75.1 74 62.2
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 4.3e-12 74.7 73 64.4
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 9.7e-12 73.6 77 63.6
Lj3g0023911 Lotus japonicus HOM05D002498 ORTHO05D002553 9.7e-12 73.6 74 60.8
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 2.8e-11 72.0 74 60.8
SalBow6G1630 Salvia bowleyana HOM05D002498 ORTHO05D002553 2.8e-11 72.0 73 61.6
SalBow6G7152 Salvia bowleyana HOM05D002498 ORTHO05D002553 2.8e-11 72.0 73 61.6
SalBow6G7196 Salvia bowleyana HOM05D002498 ORTHO05D002553 2.8e-11 72.0 73 61.6
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 4.8e-11 71.2 74 60.8
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 4.8e-11 71.2 73 65.8
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 6.3e-11 70.9 81 60.5
HPP92_026973 Vanilla planifolia HOM05D002498 ORTHO05D002553 8.2e-11 70.5 82 54.9
arahy.Tifrunner.gnm1.ann1.T5SCHP Arachis hypogaea HOM05D002498 ORTHO05D002553 1.1e-10 70.1 75 62.7
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 1.8e-10 69.3 76 61.8
arahy.Tifrunner.gnm1.ann1.U78AI9 Arachis hypogaea HOM05D002498 ORTHO05D002553 2.4e-10 68.9 75 61.3
Cc11_g03670 Coffea canephora HOM05D002498 ORTHO05D002553 4.1e-10 68.2 75 60.0
Migut.I01070 Erythranthe guttata HOM05D002498 ORTHO05D002553 9.0e-10 67.0 73 60.3
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 9.0e-10 67.0 74 59.5
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 3.4e-09 65.1 79 53.2
CDE09G0028 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 7.6e-09 63.9 82 53.7
CDE02G1135 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 2.9e-08 62.0 75 56.0
unitig_32.g11187 Utricularia gibba HOM05D002498 ORTHO05D002553 2.9e-08 62.0 64 57.8
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 1.9e-07 59.3 93 52.7
SHI32207 Sapria himalayana HOM05D002498 ORTHO05D002553 1.9e-07 59.3 71 52.1
Sc12g0010550 Simmondsia chinensis HOM05D002498 ORTHO05D002553 1.9e-07 59.3 73 50.7
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 5.5e-07 57.8 76 55.3
Rhsim12G0209700 Rhododendron simsii HOM05D002498 ORTHO05D002553 9.3e-07 57.0 56 64.3
MBI14_g32128_MAGBIO Magnolia biondii HOM05D002498 ORTHO05D002553 1.2e-06 56.6 72 52.8
PSO384G1420 Papaver somniferum HOM05D002498 ORTHO05D002553 3.6e-06 55.1 76 48.7
PSO339G1709 Papaver somniferum HOM05D002498 ORTHO05D002553 6.1e-06 54.3 74 50.0


User provided reference genes

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