Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.7e-257 891.0 430 100.0
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.1e-251 872.8 430 98.6
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 2.9e-233 811.6 430 89.8
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.3e-229 797.7 428 90.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 3.1e-227 791.6 427 88.8
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 5.2e-227 790.8 430 88.6
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 5.8e-226 787.3 430 88.1
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 2.4e-224 781.9 430 87.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.3e-222 775.4 430 87.2
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 3.0e-222 775.0 430 85.8
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.2e-218 763.1 430 84.2
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.4e-218 761.5 430 83.3
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 7.6e-218 760.4 431 84.2
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.3e-217 759.6 430 83.3
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 3.8e-217 758.1 430 83.7
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.4e-216 756.1 431 83.8
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 7.1e-216 753.8 431 84.0
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 4.6e-215 751.1 430 83.7
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.3e-214 748.8 430 82.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 5.1e-214 747.7 430 82.1
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 1.5e-213 746.1 439 81.5
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 1.9e-213 745.7 430 83.5
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.9e-213 745.7 427 83.8
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.8e-211 739.2 438 82.9
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.2e-210 736.5 432 81.5
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.2e-210 736.5 432 81.2
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 4.5e-210 734.6 430 80.9
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 7.6e-210 733.8 430 81.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 2.2e-209 732.3 415 84.1
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.1e-208 729.9 430 80.5
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.2e-207 726.5 430 80.2
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.8e-206 722.6 451 76.7
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 7.4e-205 717.2 429 78.8
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.3e-204 716.5 430 80.7
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.1e-203 713.4 430 79.5
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 4.9e-201 704.5 396 84.3
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 1.9e-200 702.6 432 78.2
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 3.2e-200 701.8 433 78.3
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.2e-199 699.9 398 85.2
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.6e-199 699.5 430 77.0
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.3e-198 696.4 431 76.3
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.3e-198 695.7 430 76.0
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 5.1e-198 694.5 430 76.0
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.1e-197 693.3 430 77.4
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.1e-197 693.3 446 74.9
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.5e-197 693.0 431 76.1
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.7e-197 691.0 394 84.8
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.3e-196 689.9 482 70.3
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.3e-196 689.9 431 77.5
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.6e-196 689.5 453 74.8
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 9.0e-195 683.7 430 76.3
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.5e-194 682.9 446 73.5
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 2.0e-194 682.6 446 73.5
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 3.4e-194 681.8 451 74.3
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.0e-193 680.2 445 73.5
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.2e-191 673.3 430 74.9
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 3.9e-190 668.3 430 73.5
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 2.2e-188 662.5 432 75.2
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.4e-187 659.1 422 75.6
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 2.6e-186 655.6 424 73.1
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 4.5e-186 654.8 399 77.2
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 5.9e-186 654.4 432 72.7
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 1.0e-185 653.7 428 72.4
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 1.7e-185 652.9 432 73.6
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.1e-184 650.2 426 73.9
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.4e-184 649.8 450 69.6
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 1.4e-184 649.8 431 73.5
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.9e-184 649.4 432 72.5
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 4.2e-184 648.3 431 73.1
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 4.2e-184 648.3 431 73.1
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 4.2e-184 648.3 430 74.0
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.5e-184 647.9 457 73.5
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.6e-183 646.4 431 71.0
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 8.8e-182 640.6 374 83.4
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 3.7e-180 635.2 398 74.9
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 4.1e-179 631.7 430 70.7
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 2.9e-177 625.5 429 70.2
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 8.5e-177 624.0 430 70.5
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.1e-176 623.6 430 70.5
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.1e-176 623.6 456 67.3
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 3.2e-176 622.1 417 70.5
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.2e-175 620.2 432 69.7
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.2e-175 620.2 422 71.6
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 3.6e-175 618.6 430 69.1
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 8.0e-175 617.5 435 69.2
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 8.8e-174 614.0 398 74.1
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.2e-172 609.4 500 62.2
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 3.7e-172 608.6 430 68.4
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 2.6e-170 602.4 432 67.1
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 4.0e-166 588.6 384 74.7
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.6e-165 585.9 349 80.2
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.7e-161 573.2 430 67.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.1e-159 566.2 435 66.9
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.6e-159 565.5 430 67.2
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 1.4e-158 563.5 389 73.3
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.4e-157 558.9 426 61.7
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.3e-156 557.0 440 67.7
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 7.5e-149 531.2 430 60.9
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.9e-144 516.5 360 67.5
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 1.2e-141 507.3 402 64.4
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.3e-137 493.8 404 61.9
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 4.6e-130 468.8 306 72.5
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 5.2e-126 455.3 427 57.8
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.3e-124 450.7 425 54.8
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 6.4e-124 448.4 425 52.7
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 7.8e-122 441.4 294 73.5
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 2.3e-121 439.9 293 73.4
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 3.0e-121 439.5 293 73.4
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 2.0e-117 426.8 429 54.3
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 8.4e-116 421.4 430 53.0
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.6e-112 408.7 443 51.0
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 2.6e-109 399.8 438 47.5
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.7e-100 370.5 629 38.6
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 6.0e-98 362.1 436 45.0
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.1e-96 357.8 287 62.0
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 2.8e-95 353.2 269 62.1
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 5.1e-89 332.4 265 62.3
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.5e-88 330.1 204 75.5
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 9.0e-86 321.6 696 33.2
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.4e-62 243.8 535 33.5
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.2e-61 241.5 325 45.8
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 7.4e-56 222.2 145 72.4
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.7e-52 211.1 167 67.1
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 9.8e-48 195.3 122 73.0
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 1.7e-44 184.5 120 70.8
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.5e-40 171.4 150 54.7
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 3.1e-38 163.7 292 36.6
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 9.1e-38 162.2 292 36.6
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 5.2e-33 146.4 112 64.3
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 2.9e-31 140.6 82 80.5
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.7e-28 131.3 69 91.3
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 2.0e-24 117.9 85 61.2
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.9e-22 111.3 58 87.9
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 6.8e-17 92.8 67 61.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.5e-16 91.7 58 75.9
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 4.4e-16 90.1 506 23.7
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.3e-12 77.8 92 40.2
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 8.1e-10 69.3 43 69.8
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 4.0e-09 67.0 44 70.5
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.7e-07 61.6 58 53.4


User provided reference genes

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