Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 9.2e-44 179.9 93 100.0
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.1e-33 146.4 94 83.0
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.1e-33 146.4 94 83.0
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 5.6e-33 144.1 93 81.7
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.2e-32 142.9 93 80.6
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 6.2e-32 140.6 91 78.0
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 8.1e-32 140.2 93 77.4
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 1.4e-31 139.4 93 75.3
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 2.3e-31 138.7 95 75.8
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 3.1e-31 138.3 93 75.3
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 6.8e-31 137.1 93 74.2
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 6.8e-31 137.1 93 74.2
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 6.8e-31 137.1 93 73.1
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 8.9e-31 136.7 93 75.3
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 77.4
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.2e-30 136.3 92 69.6
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 74.2
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.2e-30 136.3 92 73.9
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 1.5e-30 136.0 93 74.2
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.5e-30 136.0 94 74.5
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.5e-30 136.0 94 74.5
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.5e-30 136.0 94 73.4
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 2.0e-30 135.6 93 71.0
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 2.0e-30 135.6 93 73.1
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 2.0e-30 135.6 94 74.5
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 2.6e-30 135.2 93 73.1
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.4e-30 134.8 93 72.0
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.4e-30 134.8 93 74.2
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 4.4e-30 134.4 93 74.2
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 5.8e-30 134.0 95 71.6
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.5e-30 133.7 93 71.0
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 9.8e-30 133.3 93 72.0
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.3e-29 132.9 93 73.1
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 69.9
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 73.1
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 1.7e-29 132.5 94 74.5
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 69.9
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-29 132.5 93 69.9
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.2e-29 132.1 95 71.6
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 69.9
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 69.9
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 4.9e-29 131.0 93 69.9
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 4.9e-29 131.0 93 71.0
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 4.9e-29 131.0 93 68.8
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 4.9e-29 131.0 92 71.7
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 4.9e-29 131.0 93 73.1
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.9e-29 131.0 93 71.0
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 6.4e-29 130.6 92 71.7
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 6.4e-29 130.6 93 72.0
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 8.3e-29 130.2 93 72.0
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 8.3e-29 130.2 93 72.0
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 8.3e-29 130.2 93 71.0
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 8.3e-29 130.2 93 69.9
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.4e-28 129.4 93 72.0
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 1.4e-28 129.4 87 73.6
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.9e-28 129.0 93 69.9
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 1.9e-28 129.0 93 68.8
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.9e-28 129.0 91 67.0
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.9e-28 129.0 87 70.1
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.9e-28 129.0 93 71.0
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.9e-28 129.0 95 70.5
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 68.8
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 2.4e-28 128.6 95 71.6
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 68.8
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.4e-28 128.6 91 70.3
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 2.4e-28 128.6 92 69.6
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 66.7
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.4e-28 128.6 92 70.7
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 71.0
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 3.2e-28 128.3 91 69.2
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.2e-28 128.3 79 75.9
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 71.0
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 4.1e-28 127.9 93 69.9
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 5.4e-28 127.5 91 67.0
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 5.4e-28 127.5 94 71.3
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 9.2e-28 126.7 93 69.9
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 9.2e-28 126.7 93 67.7
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.2e-27 126.3 92 70.7
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.6e-27 125.9 94 68.1
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 2.1e-27 125.6 93 69.9
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 2.1e-27 125.6 90 67.8
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 2.7e-27 125.2 93 67.7
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 2.7e-27 125.2 91 67.0
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 2.7e-27 125.2 92 67.4
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 2.7e-27 125.2 92 67.4
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 2.7e-27 125.2 93 66.7
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.7e-27 125.2 94 66.0
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 3.5e-27 124.8 92 66.3
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 3.5e-27 124.8 92 66.3
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 3.5e-27 124.8 92 66.3
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 4.6e-27 124.4 93 69.9
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 4.6e-27 124.4 94 69.1
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 4.6e-27 124.4 94 68.1
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.6e-27 124.4 91 70.3
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.6e-27 124.4 91 69.2
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 6.0e-27 124.0 94 67.0
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 7.8e-27 123.6 94 68.1
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 7.8e-27 123.6 93 66.7
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 7.8e-27 123.6 93 66.7
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 7.8e-27 123.6 93 67.7
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 7.8e-27 123.6 92 69.6
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.0e-26 123.2 92 68.5
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 1.0e-26 123.2 94 66.0
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.0e-26 123.2 93 69.9
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.7e-26 122.5 95 67.4
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.7e-26 122.5 94 68.1
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 1.7e-26 122.5 93 67.7
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 2.3e-26 122.1 93 67.7
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 2.3e-26 122.1 94 67.0
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.3e-26 122.1 92 68.5
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.3e-26 122.1 91 67.0
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 5.1e-26 120.9 93 61.3
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 5.1e-26 120.9 94 64.9
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 6.6e-26 120.6 92 63.0
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 6.6e-26 120.6 92 63.0
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 8.6e-26 120.2 92 63.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 8.6e-26 120.2 92 63.0
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.1e-25 119.8 94 68.1
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.1e-25 119.8 91 65.9
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 1.5e-25 119.4 94 66.0
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 1.5e-25 119.4 94 66.0
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 1.5e-25 119.4 88 64.8
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.9e-25 119.0 81 69.1
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.9e-25 119.0 94 63.8
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 1.9e-25 119.0 93 65.6
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 2.5e-25 118.6 94 64.9
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 3.3e-25 118.2 94 64.9
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 5.6e-25 117.5 89 66.3
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 9.5e-25 116.7 93 64.5
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 1.6e-24 115.9 94 61.7
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 2.1e-24 115.5 91 63.7
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.8e-24 115.2 88 64.8
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 6.2e-24 114.0 76 69.7
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 6.2e-24 114.0 76 71.1
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 8.1e-24 113.6 92 63.0
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 1.1e-23 113.2 93 63.4
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.1e-23 113.2 92 63.0
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 1.8e-23 112.5 79 67.1
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 6.8e-23 110.5 80 63.8
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 8.9e-23 110.2 91 60.4
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 8.9e-23 110.2 94 59.6
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 1.5e-22 109.4 91 57.1
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.0e-22 109.0 91 59.3
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.6e-22 108.6 82 61.0
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 4.4e-22 107.8 91 58.2
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 9.9e-22 106.7 94 59.6
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 9.9e-22 106.7 84 69.0
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 1.7e-21 105.9 82 68.3
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 4.9e-21 104.4 81 67.9
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 6.4e-21 104.0 96 61.5
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 8.4e-21 103.6 93 58.1
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 5.4e-20 100.9 75 66.7
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 7.1e-20 100.5 82 64.6
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 2.1e-19 99.0 81 64.2
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 4.6e-19 97.8 72 62.5
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 1.3e-18 96.3 81 61.7
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.7e-18 95.9 92 52.2
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 4.3e-17 91.3 65 67.7
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 5.2e-15 84.3 61 65.6
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 6.8e-15 84.0 92 46.7
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 1.2e-14 83.2 72 55.6
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 1.2e-14 83.2 80 52.5
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 7.1e-12 73.9 52 71.2
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 7.1e-12 73.9 52 71.2
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 9.3e-12 73.6 71 43.7
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 1.6e-11 72.8 71 43.7
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.7e-11 72.0 72 50.0
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.0e-10 70.1 73 41.1
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.3e-10 69.7 73 45.2
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 4.3e-09 64.7 40 70.0
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.6e-08 62.8 86 34.9
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 4.4e-06 54.7 71 36.6


User provided reference genes

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