Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.4e-30 133.3 70 100.0
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.9e-23 110.9 65 86.2
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.0e-22 108.6 65 86.2
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.4e-22 107.5 65 84.6
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.4e-22 107.5 65 84.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.4e-22 107.5 65 81.5
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.4e-22 107.5 65 80.0
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 7.4e-22 106.7 65 83.1
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.2e-21 105.1 65 81.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.8e-21 104.8 64 82.8
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.1e-20 101.3 65 75.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 6.9e-20 100.1 65 80.0
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 9.1e-20 99.8 65 75.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 9.1e-20 99.8 65 76.9
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 9.1e-20 99.8 65 76.9
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-19 99.4 68 73.5
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 2.0e-19 98.6 65 73.8
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.0e-19 98.6 61 83.6
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 2.6e-19 98.2 64 75.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 3.4e-19 97.8 68 72.1
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 4.5e-19 97.4 65 73.8
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.7e-19 96.7 65 72.3
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 7.7e-19 96.7 65 70.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.0e-18 96.3 65 72.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.7e-18 95.5 65 72.3
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.2e-18 95.1 65 70.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.9e-18 94.7 65 70.8
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 6.5e-18 93.6 65 67.7
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 6.5e-18 93.6 65 72.3
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 6.5e-18 93.6 65 70.8
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 8.5e-18 93.2 65 70.8
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.1e-17 92.8 65 69.2
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.4e-17 92.4 65 70.8
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.4e-17 92.4 65 69.2
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.4e-17 92.4 61 75.4
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.4e-17 92.4 65 72.3
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.9e-17 92.0 65 70.8
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.9e-17 92.0 67 68.7
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.5e-17 91.7 66 68.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.5e-17 91.7 66 68.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 2.5e-17 91.7 65 69.2
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.5e-17 91.7 66 66.7
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.5e-17 91.7 65 67.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.2e-17 91.3 65 67.7
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.2e-17 91.3 65 67.7
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.2e-17 91.3 66 69.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.2e-17 90.9 65 69.2
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.2e-17 90.9 65 66.2
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 4.2e-17 90.9 65 70.8
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.5e-17 90.5 64 68.8
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.5e-17 90.5 64 68.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 5.5e-17 90.5 64 70.3
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.5e-17 90.5 65 70.8
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 5.5e-17 90.5 65 64.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 5.5e-17 90.5 65 67.7
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 7.2e-17 90.1 65 67.7
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 7.2e-17 90.1 64 70.3
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 7.2e-17 90.1 64 70.3
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 7.2e-17 90.1 68 64.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 9.4e-17 89.7 64 70.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.4e-17 89.7 65 64.6
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 9.4e-17 89.7 64 67.2
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.2e-16 89.4 65 66.2
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.2e-16 89.4 65 66.2
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.2e-16 89.4 64 64.1
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.2e-16 89.4 64 64.1
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.6e-16 89.0 65 67.7
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.1e-16 88.6 64 68.8
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.1e-16 88.6 61 68.9
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.1e-16 88.6 65 66.2
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.1e-16 88.6 64 67.2
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.1e-16 88.6 65 66.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 2.7e-16 88.2 67 65.7
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.7e-16 88.2 65 63.1
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 3.6e-16 87.8 65 63.1
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 4.7e-16 87.4 64 64.1
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 4.7e-16 87.4 65 60.0
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.7e-16 87.4 101 50.5
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 6.1e-16 87.0 65 67.7
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 6.1e-16 87.0 64 68.8
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 8.0e-16 86.7 65 64.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.0e-16 86.7 65 66.2
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.0e-15 86.3 63 68.3
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.4e-15 85.9 65 64.6
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 3.0e-15 84.7 63 63.5
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 3.0e-15 84.7 73 63.0
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.9e-15 84.3 64 60.9
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.9e-15 84.3 65 63.1
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.9e-15 84.3 73 63.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.9e-15 84.3 73 61.6
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 3.9e-15 84.3 73 63.0
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 6.7e-15 83.6 60 66.7
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 6.7e-15 83.6 60 66.7
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.7e-15 83.6 62 69.4
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 6.7e-15 83.6 65 61.5
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 8.8e-15 83.2 61 67.2
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 1.1e-14 82.8 64 64.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-14 82.8 73 61.6
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.6e-14 81.6 73 61.6
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 3.3e-14 81.3 66 60.6
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.4e-14 80.9 73 60.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 5.7e-14 80.5 65 61.5
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 5.7e-14 80.5 54 68.5
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 5.7e-14 80.5 71 57.7
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 9.7e-14 79.7 64 56.2
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.2e-13 78.6 76 55.3
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.2e-13 78.6 82 52.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 4.8e-13 77.4 54 66.7
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 6.3e-13 77.0 60 65.0
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 6.3e-13 77.0 47 78.7
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.4e-12 75.9 66 59.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.4e-12 75.1 61 57.4
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 3.1e-12 74.7 67 56.7
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.1e-12 74.7 50 72.0
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.1e-12 74.3 43 83.7
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 4.1e-12 74.3 61 52.5
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 4.1e-12 74.3 61 52.5
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 4.1e-12 74.3 64 50.0
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 9.1e-12 73.2 66 59.1
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.2e-11 72.8 67 53.7
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-11 72.8 67 53.7
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-11 72.4 67 53.7
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-11 72.4 67 53.7
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 3.5e-11 71.2 43 79.1
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 5.0e-10 67.4 42 73.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 8.5e-10 66.6 65 52.3
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-09 66.2 67 49.3
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 4.2e-09 64.3 38 73.7
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 9.4e-09 63.2 38 78.9
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 9.4e-09 63.2 81 48.1
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 8.0e-08 60.1 42 66.7
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.4e-07 59.3 38 73.7
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.3e-07 58.5 40 65.0
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 7.5e-06 53.5 48 56.2


User provided reference genes

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