Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023548 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D007302 7.8e-115 417.2 212 100.0
CSS0029976 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 9.9e-94 347.1 209 88.0
CSS0041479 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 5.1e-58 228.4 220 60.5
Dinv24138 Davidia involucrata HOM05D000650 ORTHO05D007302 1.0e-42 177.6 214 49.5
vmacro01873 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 2.9e-37 159.5 204 48.0
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 3.2e-36 156.0 198 46.0
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 4.7e-35 152.1 196 47.4
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 4.4e-33 145.6 195 45.6
Rhsim11G0141200 Rhododendron simsii HOM05D000650 ORTHO05D007302 4.1e-31 139.0 162 49.4
vmacro01872 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 1.2e-30 137.5 195 43.1
Nitab4.5_0004586g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 5.9e-30 135.2 194 40.7
Nitab4.5_0014595g0010 Nicotiana tabacum HOM05D000650 ORTHO05D007302 3.2e-28 129.4 200 41.5
Lj5A228T42 Lonicera japonica HOM05D000650 ORTHO05D007302 5.2e-26 122.1 196 39.3
Lj5A228T44 Lonicera japonica HOM05D003426 ORTHO05D007302 6.8e-26 121.7 144 44.4
Dinv24137 Davidia involucrata HOM05D000650 ORTHO05D007302 4.8e-24 115.5 202 38.1
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 4.8e-24 115.5 153 45.8
Nitab4.5_0001671g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 7.0e-23 111.7 194 36.6
Peaxi162Scf00003g03237 Petunia axillaris HOM05D021013 ORTHO05D007302 4.5e-22 109.0 144 41.7
PGSC0003DMG400029015 Solanum tuberosum HOM05D000650 ORTHO05D007302 4.5e-22 109.0 195 37.4
CAN.G531.4 Capsicum annuum HOM05D000650 ORTHO05D007302 5.9e-22 108.6 159 40.9
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 1.0e-21 107.8 187 38.5
Oeu063550.2 Olea europaea HOM05D000650 ORTHO05D007302 2.9e-21 106.3 172 37.8
Solyc10g047670.2 Solanum lycopersicum HOM05D000650 ORTHO05D007302 2.9e-21 106.3 159 41.5
Sopen10g018090 Solanum pennellii HOM05D000650 ORTHO05D007302 8.5e-21 104.8 187 35.8
FAN20G2154 Fragaria x ananassa HOM05D003426 ORTHO05D007302 1.5e-20 104.0 213 33.8
FAN24G3507 Fragaria x ananassa HOM05D000650 ORTHO05D007302 3.2e-20 102.8 215 34.0
Nitab4.5_0001259g0050 Nicotiana tabacum HOM05D000650 ORTHO05D007302 7.2e-20 101.7 195 35.4
TWI59G0327 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 7.2e-20 101.7 174 38.5
FvH4_2g11450 Fragaria vesca HOM05D000650 ORTHO05D007302 1.2e-19 100.9 210 35.2
CSS0042971 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D000735 2.1e-19 100.1 94 60.6
Actinidia00314 Actinidia chinensis HOM05D000650 ORTHO05D007302 6.1e-19 98.6 140 46.4
QL11p025811 Quercus lobata HOM05D000650 ORTHO05D007302 6.1e-19 98.6 147 38.8
TWI14G0488 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 6.1e-19 98.6 176 37.5
Rhsim11G0141400 Rhododendron simsii HOM05D002143 ORTHO05D002260 1.0e-18 97.8 140 45.0
TAR381G0504 Trochodendron aralioides HOM05D000650 ORTHO05D000735 1.0e-18 97.8 221 34.4
FAN15G2135 Fragaria x ananassa HOM05D000650 ORTHO05D007302 1.8e-18 97.1 218 33.5
GSVIVG01012543001 Vitis vinifera HOM05D000650 ORTHO05D007302 1.8e-18 97.1 206 32.0
PGSC0003DMG402030146 Solanum tuberosum HOM05D021013 ORTHO05D007302 5.2e-18 95.5 179 38.0
DCAR_001849 Daucus carota HOM05D000650 ORTHO05D007302 8.8e-18 94.7 181 38.1
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 2.0e-17 93.6 153 40.5
Prupe.8G072900 Prunus persica HOM05D000650 ORTHO05D007302 2.6e-17 93.2 219 32.9
Atru.chr6.1308 Acer truncatum HOM05D000650 ORTHO05D007302 3.4e-17 92.8 139 38.1
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 3.4e-17 92.8 220 35.0
Glyma.08G066700 Glycine max HOM05D000650 ORTHO05D007302 3.4e-17 92.8 199 31.2
RcHm_v2.0_Chr6g0270081 Rosa chinensis HOM05D000650 ORTHO05D007302 3.4e-17 92.8 232 34.9
GSVIVG01000328001 Vitis vinifera HOM05D000650 ORTHO05D007302 4.4e-17 92.4 226 30.5
Rhsim11G0142600 Rhododendron simsii HOM05D002143 ORTHO05D338981 9.8e-17 91.3 83 55.4
VMungo0251G0586 Vigna mungo HOM05D000650 ORTHO05D007302 9.8e-17 91.3 190 34.7
GSVIVG01000320001 Vitis vinifera HOM05D000650 ORTHO05D007302 2.8e-16 89.7 222 28.8
Prupe.8G073000 Prunus persica HOM05D000650 ORTHO05D007302 3.7e-16 89.4 218 33.5
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 4.9e-16 89.0 163 32.5
Duzib132G0086 Durio zibethinus HOM05D000650 ORTHO05D007302 1.1e-15 87.8 206 35.4
RcHm_v2.0_Chr6g0270121 Rosa chinensis HOM05D000650 ORTHO05D007302 1.4e-15 87.4 239 34.7
RcHm_v2.0_Chr6g0270171 Rosa chinensis HOM05D000650 ORTHO05D007302 1.4e-15 87.4 250 30.4
TAR625G0371 Trochodendron aralioides HOM05D000650 ORTHO05D000735 5.4e-15 85.5 146 37.0
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 1.6e-14 84.0 135 35.6
Haze_10696 Corylus avellana HOM05D000650 ORTHO05D007302 3.5e-14 82.8 190 35.8
Rhsim11G0141300 Rhododendron simsii HOM05D000650 ORTHO05D007302 3.5e-14 82.8 185 33.5
Atru.chr6.1306 Acer truncatum HOM05D000650 ORTHO05D007302 4.5e-14 82.4 169 36.7
Haze_10691 Corylus avellana HOM05D000650 ORTHO05D007302 7.7e-14 81.6 220 33.2
Medtr4g093280 Medicago truncatula HOM05D000650 ORTHO05D007302 1.3e-13 80.9 193 31.6
Sabra16G0177000 Salix brachista HOM05D000650 ORTHO05D007302 3.8e-13 79.3 135 33.3
Lj4g0018033 Lotus japonicus HOM05D000650 ORTHO05D007302 8.6e-13 78.2 154 36.4
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 1.1e-12 77.8 147 35.4
Duzib248G1171 Durio zibethinus HOM05D000650 ORTHO05D007302 1.1e-12 77.8 202 31.7
Gohir.A03G178000 Gossypium hirsutum HOM05D000650 ORTHO05D007302 1.1e-12 77.8 233 32.6
Potri.009G078500 Populus trichocarpa HOM05D000650 ORTHO05D007302 1.1e-12 77.8 165 33.3
Sabra09G0060100 Salix brachista HOM05D000650 ORTHO05D007302 1.1e-12 77.8 138 34.1
Haze_10697 Corylus avellana HOM05D000650 ORTHO05D007302 1.5e-12 77.4 190 33.2
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.9e-12 77.0 181 30.9
QL11p025849 Quercus lobata HOM05D000650 ORTHO05D007302 1.9e-12 77.0 232 30.2
QL11p029380 Quercus lobata HOM05D000650 ORTHO05D007302 2.5e-12 76.6 211 30.3
Thecc.02G127100 Theobroma cacao HOM05D000650 ORTHO05D007302 2.5e-12 76.6 210 29.5
Haze_10689 Corylus avellana HOM05D000650 ORTHO05D007302 3.3e-12 76.3 220 32.7
COL.COLO4_32413 Corchorus olitorius HOM05D000027 ORTHO05D001579 7.3e-12 75.1 208 28.8
COL.COLO4_32414 Corchorus olitorius HOM05D000650 ORTHO05D007302 9.5e-12 74.7 67 55.2
Ca_18401_v3 Cicer arietinum L. HOM05D000650 ORTHO05D007302 1.6e-11 73.9 165 32.7
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 1.6e-11 73.9 148 29.7
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.6e-11 73.9 182 30.8
Migut.B00537 Erythranthe guttata HOM05D000650 ORTHO05D000735 2.1e-11 73.6 208 29.8
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.1e-11 73.6 151 31.1
FvH4_2g11420 Fragaria vesca HOM05D000650 ORTHO05D007302 3.6e-11 72.8 165 35.2
QL11p029412 Quercus lobata HOM05D000650 ORTHO05D007302 3.6e-11 72.8 215 31.6
TPR.G36043 Trifolium pratense HOM05D000650 ORTHO05D007302 3.6e-11 72.8 190 31.6
Nitab4.5_0012000g0010 Nicotiana tabacum HOM05D000650 ORTHO05D007302 6.1e-11 72.0 272 28.7
Potri.001G283000 Populus trichocarpa HOM05D000650 ORTHO05D007302 6.1e-11 72.0 202 29.2
Lj4g0012325 Lotus japonicus HOM05D000650 ORTHO05D007302 8.0e-11 71.6 180 31.7
Lj4g0020146 Lotus japonicus HOM05D000650 ORTHO05D007302 8.0e-11 71.6 214 29.0
TPR.G20268 Trifolium pratense HOM05D000650 ORTHO05D007302 8.0e-11 71.6 191 29.8
Gorai.005G226700 Gossypium raimondii HOM05D000650 ORTHO05D007302 1.0e-10 71.2 229 31.9
Manes.07G043100 Manihot esculenta HOM05D000650 ORTHO05D015160 1.0e-10 71.2 167 31.7
RcHm_v2.0_Chr6g0270191 Rosa chinensis HOM05D000650 ORTHO05D007302 1.0e-10 71.2 112 42.9
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 1.4e-10 70.9 205 26.8
Nn1g05634 Nelumbo nucifera HOM05D000650 ORTHO05D000735 1.4e-10 70.9 137 29.9
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 2.3e-10 70.1 190 27.9
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 3.0e-10 69.7 169 30.8
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 4.0e-10 69.3 157 32.5
Lj5C228T13 Lonicera japonica HOM05D002783 ORTHO05D003055 4.0e-10 69.3 78 48.7
Manes.07G043000 Manihot esculenta HOM05D000650 ORTHO05D007302 4.0e-10 69.3 213 29.6
SGA_v2.0_scaffold83G26387 Striga asiatica HOM05D000650 ORTHO05D000735 4.0e-10 69.3 141 27.7
Medtr4g093510 Medicago truncatula HOM05D000650 ORTHO05D007302 5.2e-10 68.9 202 28.7
Sabra16G0176300 Salix brachista HOM05D000650 ORTHO05D007302 5.2e-10 68.9 235 28.1
FAN27G0840 Fragaria x ananassa HOM05D000650 ORTHO05D007302 6.8e-10 68.6 139 35.3
Lj4g0020470 Lotus japonicus HOM05D000650 ORTHO05D007302 6.8e-10 68.6 171 32.2
Manes.10G096300 Manihot esculenta HOM05D000650 ORTHO05D007302 6.8e-10 68.6 190 26.3
TAR625G0834 Trochodendron aralioides HOM05D000650 ORTHO05D000735 6.8e-10 68.6 125 35.2
CANSAT54G0504 Cannabis sativa HOM05D000650 ORTHO05D007302 8.9e-10 68.2 159 31.4
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 1.2e-09 67.8 170 32.9
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 1.5e-09 67.4 159 30.8
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.5e-09 67.4 164 32.9
Nitab4.5_0004586g0040 Nicotiana tabacum HOM05D000650 ORTHO05D007302 1.5e-09 67.4 173 33.5
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 2.0e-09 67.0 138 29.7
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 2.0e-09 67.0 189 28.6
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 2.6e-09 66.6 173 28.3
FAN20G2101 Fragaria x ananassa HOM05D000650 ORTHO05D007302 3.4e-09 66.2 165 33.9
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 3.4e-09 66.2 197 29.9
Psat7g102120 Pisum sativum HOM05D000650 ORTHO05D007302 4.4e-09 65.9 140 32.9
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 5.7e-09 65.5 167 29.3
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 5.7e-09 65.5 188 28.7
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 7.5e-09 65.1 147 27.2
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 9.8e-09 64.7 153 29.4
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.3e-08 64.3 181 28.2
RcHm_v2.0_Chr6g0270181 Rosa chinensis HOM05D000650 ORTHO05D007302 1.3e-08 64.3 121 40.5
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 2.2e-08 63.5 170 31.2
PGSC0003DMG401030146 Solanum tuberosum HOM05D000650 ORTHO05D007302 2.2e-08 63.5 90 41.1
CANSAT54G0545 Cannabis sativa HOM05D000650 ORTHO05D007302 2.9e-08 63.2 232 25.4
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 2.9e-08 63.2 153 28.8
Prupe.8G072500 Prunus persica HOM05D000650 ORTHO05D007302 2.9e-08 63.2 202 30.2
CANSAT54G2685 Cannabis sativa HOM05D000650 ORTHO05D007302 3.7e-08 62.8 232 25.4
Gohir.D02G201700 Gossypium hirsutum HOM05D000650 ORTHO05D007302 3.7e-08 62.8 240 30.0
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 6.4e-08 62.0 199 28.1
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 6.4e-08 62.0 179 28.5
Os09g0421600 Oryza sativa ssp. japonica HOM05D015084 ORTHO05D015160 6.4e-08 62.0 155 28.4
Os06g0651300 Oryza sativa ssp. japonica HOM05D003426 ORTHO05D003816 8.3e-08 61.6 149 34.2
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 8.3e-08 61.6 213 27.7
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.1e-07 61.2 197 29.4
GSVIVG01000331001 Vitis vinifera HOM05D000650 ORTHO05D007302 1.1e-07 61.2 120 35.0
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 1.4e-07 60.8 151 29.1
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 1.4e-07 60.8 197 28.9
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.4e-07 60.8 197 29.4
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 1.4e-07 60.8 179 25.7
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 1.8e-07 60.5 172 27.9
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 1.8e-07 60.5 156 28.8
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.8e-07 60.5 183 29.5
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 1.8e-07 60.5 202 27.2
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 1.8e-07 60.5 160 26.9
Atru.chr6.1309 Acer truncatum HOM05D000650 ORTHO05D007302 2.4e-07 60.1 98 39.8
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 2.4e-07 60.1 185 28.1
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 4.1e-07 59.3 168 27.4
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 4.1e-07 59.3 181 30.9
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 4.1e-07 59.3 166 27.7
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 4.1e-07 59.3 160 29.4
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 4.1e-07 59.3 172 30.2
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 5.4e-07 58.9 179 28.5
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 5.4e-07 58.9 151 29.8
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 7.0e-07 58.5 205 26.3
Potri.017G139000 Populus trichocarpa HOM05D000650 ORTHO05D007302 9.2e-07 58.2 211 30.3
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 1.2e-06 57.8 176 27.3
Psat7g102080 Pisum sativum HOM05D000650 ORTHO05D007302 1.6e-06 57.4 232 26.3
CDE02G2039 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 2.0e-06 57.0 179 27.9
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 2.0e-06 57.0 213 24.4
GSVIVG01038510001 Vitis vinifera HOM05D000650 ORTHO05D007302 2.0e-06 57.0 131 31.3
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 2.7e-06 56.6 207 24.6
Os09g0421700 Oryza sativa ssp. japonica HOM05D015084 ORTHO05D015160 2.7e-06 56.6 134 26.1
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 2.7e-06 56.6 163 25.8
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 2.7e-06 56.6 192 28.1
Medtr4g093260 Medicago truncatula HOM05D000650 ORTHO05D007302 3.5e-06 56.2 48 56.2
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 3.5e-06 56.2 155 29.7
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 3.5e-06 56.2 160 25.6
Manes.10G096200 Manihot esculenta HOM05D000650 ORTHO05D014428 4.6e-06 55.8 199 26.6
PGSC0003DMG400004398 Solanum tuberosum HOM05D021013 ORTHO05D007302 4.6e-06 55.8 164 28.0
Zm00001eb388770 Zea mays HOM05D003426 ORTHO05D003816 4.6e-06 55.8 189 25.9
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 5.9e-06 55.5 160 24.4
CDE05G1528 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 5.9e-06 55.5 179 27.9
Lj5A228G43 Lonicera japonica HOM05D000650 ORTHO05D007302 5.9e-06 55.5 86 38.4
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.9e-06 55.5 143 28.0
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 7.8e-06 55.1 178 24.7
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 7.8e-06 55.1 181 24.3


User provided reference genes

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