Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023493 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 0.0e+00 2733.7 1523 100.0
CSS0042378 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 0.0e+00 1933.7 1524 72.8
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 0.0e+00 1821.6 1534 67.1
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 0.0e+00 1789.6 1563 65.3
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 0.0e+00 1776.1 1545 67.4
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 0.0e+00 1605.9 1618 59.9
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 0.0e+00 1498.8 1597 56.7
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 0.0e+00 1488.4 1594 57.9
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 0.0e+00 1459.1 1547 59.2
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 0.0e+00 1434.9 1592 56.5
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 0.0e+00 1407.5 1598 56.9
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 0.0e+00 1380.9 1341 59.1
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 0.0e+00 1355.5 1354 58.7
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 0.0e+00 1352.0 1643 52.6
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 0.0e+00 1341.6 1567 54.6
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 0.0e+00 1322.4 1566 56.1
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 0.0e+00 1321.2 1302 59.3
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 0.0e+00 1318.5 1371 56.5
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 0.0e+00 1317.8 1547 52.2
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 0.0e+00 1312.4 1307 58.3
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 0.0e+00 1311.6 1378 56.7
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 0.0e+00 1304.7 1651 50.4
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 0.0e+00 1304.7 1547 51.7
Actinidia12488 Actinidia chinensis HOM05D003463 ORTHO05D004206 0.0e+00 1301.6 1148 69.2
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 0.0e+00 1297.3 1629 53.9
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 0.0e+00 1276.5 1582 50.4
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 0.0e+00 1275.8 1307 57.4
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 0.0e+00 1275.0 1338 57.8
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 0.0e+00 1267.3 1527 52.3
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 0.0e+00 1250.3 1740 48.0
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 0.0e+00 1250.3 1664 52.1
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 0.0e+00 1248.8 1617 53.0
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 0.0e+00 1240.7 1582 51.9
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 0.0e+00 1234.2 1628 49.0
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 0.0e+00 1233.0 1646 49.0
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 0.0e+00 1229.2 1609 48.5
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 0.0e+00 1226.1 1565 55.0
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 0.0e+00 1223.0 1624 48.6
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1220.7 1368 55.3
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 0.0e+00 1220.7 1385 53.4
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 0.0e+00 1213.0 1694 50.4
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 0.0e+00 1212.6 1558 51.9
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 0.0e+00 1209.1 1336 55.5
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 0.0e+00 1207.6 1324 56.2
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 0.0e+00 1206.0 1581 51.7
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 0.0e+00 1200.3 1354 53.6
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1199.5 1578 50.8
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 0.0e+00 1195.6 1526 49.7
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 0.0e+00 1194.5 1589 48.8
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1194.1 1697 50.4
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1191.0 1654 51.0
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 0.0e+00 1190.3 1568 50.0
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 0.0e+00 1186.8 1576 48.0
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1186.8 1580 49.9
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 0.0e+00 1186.4 1554 47.5
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 0.0e+00 1183.3 1567 49.7
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1179.9 1573 49.9
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 0.0e+00 1177.2 1606 49.3
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 0.0e+00 1169.1 1616 46.2
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1169.1 1791 47.6
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 0.0e+00 1168.7 1628 48.6
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 0.0e+00 1167.1 1543 47.1
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 0.0e+00 1166.8 1558 48.2
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1164.8 1581 50.0
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 0.0e+00 1162.9 1628 46.7
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 0.0e+00 1158.3 1655 47.5
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 0.0e+00 1157.9 1568 49.0
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 0.0e+00 1157.5 1560 49.6
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 0.0e+00 1152.9 1619 48.2
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 0.0e+00 1144.8 1581 47.4
TAR627G1072 Trochodendron aralioides HOM05D003463 ORTHO05D004206 0.0e+00 1141.7 1034 58.5
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 0.0e+00 1139.8 1591 45.0
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 0.0e+00 1129.8 1564 50.8
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 0.0e+00 1123.2 1588 47.0
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 0.0e+00 1115.5 1586 45.9
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 0.0e+00 1113.6 1546 48.4
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 0.0e+00 1111.7 1626 47.4
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 0.0e+00 1108.6 1582 44.2
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 0.0e+00 1105.9 1572 49.7
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 0.0e+00 1097.0 1374 51.6
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 0.0e+00 1090.5 1558 51.8
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 0.0e+00 1090.1 1727 45.8
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 0.0e+00 1083.9 1326 49.7
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 0.0e+00 1080.1 1622 42.2
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 0.0e+00 1076.2 1552 47.7
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 1.0e-311 1074.3 1617 47.2
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 3.4e-305 1052.4 1617 42.2
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 2.9e-304 1049.3 1315 46.2
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 2.5e-303 1046.2 1643 48.0
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 2.1e-302 1043.1 1507 43.3
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 7.9e-302 1041.2 1616 44.6
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 2.3e-301 1039.6 1592 45.2
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 6.7e-301 1038.1 1592 45.6
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 2.5e-300 1036.2 1605 41.2
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 5.7e-300 1035.0 1605 41.2
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 5.7e-300 1035.0 1605 41.2
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 1.1e-298 1030.8 1596 41.5
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 2.4e-298 1029.6 1607 41.0
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 2.4e-298 1029.6 1607 41.0
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 1.4e-295 1020.4 1608 42.4
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.9e-295 1020.0 1608 42.4
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.1e-292 1010.7 1606 40.9
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 2.5e-292 1009.6 1623 41.8
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 9.7e-292 1007.7 1324 46.5
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 1.2e-289 1000.7 1320 46.4
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 2.2e-288 996.5 1563 42.8
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 3.8e-288 995.7 1573 42.1
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 2.6e-284 983.0 931 55.2
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 2.8e-283 979.5 1610 41.9
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 3.4e-281 972.6 936 54.0
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 7.8e-233 812.0 655 64.7
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 8.6e-232 808.5 962 46.5
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 2.3e-224 783.9 943 45.1
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.9e-215 754.2 948 44.3
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 9.6e-207 725.3 1404 38.7
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 4.8e-206 723.0 930 44.3
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 6.9e-173 612.8 707 48.4
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 7.7e-156 556.2 348 80.2
HPP92_004145 Vanilla planifolia HOM05D003463 ORTHO05D004206 2.4e-149 534.6 1570 35.2
Actinidia27019 Actinidia chinensis HOM05D003463 ORTHO05D004206 9.4e-146 522.7 340 77.4
SHI10284 Sapria himalayana HOM05D003463 ORTHO05D004206 3.6e-145 520.8 941 38.4
Actinidia27020 Actinidia chinensis HOM05D003463 ORTHO05D026297 1.0e-107 396.4 537 69.1
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 7.6e-95 353.6 1219 27.2
TPR.G33076 Trifolium pratense HOM05D003463 ORTHO05D004206 5.8e-79 300.8 946 35.0
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 3.8e-70 271.6 308 48.4
Lj1C750T6 Lonicera japonica HOM05D003463 ORTHO05D004206 4.4e-50 204.9 140 75.0
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 7.0e-48 197.6 1047 24.4
unitig_8.g4613 Utricularia gibba HOM05D003463 ORTHO05D004206 5.0e-46 191.4 166 57.2
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 9.4e-45 187.2 246 45.1
Zm00001eb053980 Zea mays HOM05D003463 ORTHO05D004206 5.0e-38 164.9 169 49.7
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.9e-37 162.9 164 54.3
Zm00001eb427860 Zea mays HOM05D003463 ORTHO05D004206 2.5e-37 162.5 169 49.1
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.2e-36 160.2 134 61.9
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 8.0e-36 157.5 565 24.4
Lj1P750T17 Lonicera japonica HOM05D003463 ORTHO05D004206 4.0e-35 155.2 185 55.7
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.0e-35 155.2 407 27.8
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.0e-35 155.2 407 27.8
Aa31LG9G1440 Aethionema arabicum HOM05D003463 ORTHO05D000047 2.0e-34 152.9 202 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 8.3e-33 147.5 980 22.3
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 1.0e-30 140.6 492 24.8
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.7e-28 131.7 524 22.9
Lj1A750T32 Lonicera japonica HOM05D003463 ORTHO05D004206 1.0e-27 130.6 368 31.5
SHI10283 Sapria himalayana HOM05D003463 ORTHO05D004206 3.0e-27 129.0 122 52.5
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 5.4e-24 118.2 146 44.5
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 5.4e-24 118.2 146 44.5
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.0e-19 102.4 115 47.0
SHI35802 Sapria himalayana HOM05D000049 ORTHO05D000027 5.9e-15 88.2 101 49.5
GSVIVG01026194001 Vitis vinifera HOM05D003463 ORTHO05D004206 1.3e-14 87.0 142 41.5
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 5.6e-13 81.6 176 27.8
unitig_8.g4612 Utricularia gibba HOM05D003463 ORTHO05D026297 1.6e-12 80.1 129 44.2
Psat3g206120 Pisum sativum HOM05D003463 ORTHO05D004206 6.2e-12 78.2 114 38.6
Medtr5g037343 Medicago truncatula HOM05D003463 ORTHO05D004206 1.0e-11 77.4 151 31.1
Psat7g124560 Pisum sativum HOM05D003463 ORTHO05D030491 8.9e-11 74.3 90 47.8
TAR627G0797 Trochodendron aralioides HOM05D003463 ORTHO05D026297 9.8e-10 70.9 121 40.5
SHI51163 Sapria himalayana HOM05D000049 ORTHO05D000027 1.7e-09 70.1 95 44.2
SHI05209 Sapria himalayana HOM05D000624 ORTHO05D004206 5.4e-08 65.1 99 41.4
arahy.Tifrunner.gnm1.ann1.U5DX0D Arachis hypogaea HOM05D003463 ORTHO05D004206 9.2e-08 64.3 37 78.4
Nn1g00832 Nelumbo nucifera HOM05D003463 ORTHO05D026297 1.6e-07 63.5 83 50.6
arahy.Tifrunner.gnm1.ann1.20IHL0 Arachis hypogaea HOM05D003463 ORTHO05D004206 4.6e-07 62.0 37 78.4
Lj1A751G18 Lonicera japonica HOM05D014456 ORTHO05D011476 4.6e-07 62.0 67 58.2
arahy.Tifrunner.gnm1.ann1.NK9NB9 Arachis hypogaea HOM05D003463 ORTHO05D004206 1.3e-06 60.5 84 45.2
Zm00001eb419290 Zea mays HOM05D003463 ORTHO05D004206 2.3e-06 59.7 52 51.9
CDE05G2677 Ceratophyllum demersum HOM05D003463 ORTHO05D130758 3.0e-06 59.3 136 33.1


User provided reference genes

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