Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.9e-141 505.0 289 100.0
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 6.4e-120 434.5 289 81.3
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 6.5e-96 354.8 274 76.6
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.6e-94 350.1 288 68.4
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.5e-94 349.0 280 74.3
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.1e-92 344.0 287 65.5
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.5e-92 343.6 291 71.8
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 4.8e-91 338.6 286 66.8
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 8.2e-91 337.8 286 66.1
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.7e-88 330.1 284 63.0
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.0e-85 320.9 288 63.2
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 2.3e-85 319.7 285 61.8
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.9e-85 318.9 300 64.3
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.5e-84 317.0 281 64.1
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.5e-84 316.2 284 63.7
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 7.4e-84 314.7 276 63.8
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 7.4e-84 314.7 270 64.8
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.4e-84 314.7 270 64.8
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 2.4e-82 309.7 281 61.9
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 5.9e-81 305.1 284 62.7
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 5.0e-80 302.0 276 60.5
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 2.1e-78 296.6 266 62.8
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 1.0e-77 294.3 285 61.8
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.0e-77 294.3 282 59.2
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.0e-77 294.3 286 59.8
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.0e-77 294.3 286 63.3
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.3e-77 293.1 292 60.3
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 3.3e-76 289.3 250 67.6
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 5.7e-76 288.5 286 58.7
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 5.7e-76 288.5 245 67.8
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 7.4e-76 288.1 279 60.9
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.3e-75 287.3 229 68.6
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.3e-75 287.3 272 60.3
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-75 287.3 275 68.0
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 2.2e-75 286.6 291 59.5
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 2.2e-75 286.6 273 60.8
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.8e-75 286.2 262 59.9
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.8e-75 286.2 288 55.6
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 4.8e-75 285.4 248 66.5
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 4.8e-75 285.4 281 58.0
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.1e-74 284.3 293 59.4
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.4e-74 283.9 297 58.9
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.4e-74 283.9 283 59.4
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.4e-74 283.9 277 59.6
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.4e-74 283.9 290 57.2
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.8e-74 283.5 287 58.2
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 3.1e-74 282.7 253 66.4
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 7.0e-74 281.6 280 57.5
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 9.1e-74 281.2 286 57.3
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.2e-73 280.8 293 56.3
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.5e-73 280.4 283 58.7
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 2.6e-73 279.6 232 66.4
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 4.5e-73 278.9 288 61.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.5e-73 278.9 288 55.2
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 5.9e-73 278.5 248 63.3
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 7.7e-73 278.1 277 58.1
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.0e-72 277.7 283 59.0
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.3e-72 277.3 283 56.9
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.3e-72 277.3 277 58.1
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.3e-72 277.3 280 59.6
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.2e-72 276.6 295 54.6
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 2.2e-72 276.6 276 59.4
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.1e-71 274.2 287 59.6
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.1e-71 274.2 281 56.9
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.2e-70 270.8 290 54.8
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.6e-70 270.4 283 56.2
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.7e-70 268.9 276 58.3
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.0e-69 267.7 286 56.3
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-69 267.3 276 58.3
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 6.7e-69 265.0 247 58.3
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.5e-68 263.8 270 55.2
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.6e-68 263.1 285 55.1
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 2.6e-68 263.1 291 54.0
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 4.4e-68 262.3 270 56.7
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.7e-68 261.9 248 59.7
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 7.4e-68 261.5 270 56.3
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 9.7e-68 261.2 282 56.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.7e-68 261.2 290 54.1
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 9.7e-68 261.2 269 56.5
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.3e-67 260.8 291 54.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.3e-67 260.8 291 53.6
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 2.2e-67 260.0 287 55.7
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.2e-67 260.0 290 53.8
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.8e-67 259.6 276 56.5
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-67 259.6 290 53.8
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.8e-67 259.6 270 54.4
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 4.8e-67 258.8 249 59.8
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 6.3e-67 258.5 273 56.8
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 6.3e-67 258.5 276 54.0
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 6.3e-67 258.5 285 55.1
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.2e-67 258.1 290 53.4
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-66 257.3 247 59.9
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.4e-66 257.3 294 52.0
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 1.8e-66 256.9 271 56.5
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 2.4e-66 256.5 269 55.8
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 2.4e-66 256.5 276 60.1
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 3.1e-66 256.1 267 56.2
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-65 254.2 286 54.2
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.0e-65 253.4 274 56.6
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 4.5e-65 252.3 246 57.3
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 7.7e-65 251.5 286 53.8
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-64 251.1 257 56.0
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-64 250.4 283 52.7
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.7e-64 250.4 283 52.7
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.7e-64 250.4 283 52.7
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 2.9e-64 249.6 251 58.6
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-63 247.3 290 52.8
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.5e-63 245.4 292 52.4
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.0e-61 241.1 294 52.0
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-61 240.7 296 56.1
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.2e-61 238.8 294 52.4
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 2.0e-60 236.9 260 53.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 2.6e-60 236.5 260 53.1
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 9.7e-60 234.6 263 55.5
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.2e-59 233.4 223 57.8
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.1e-58 229.6 290 49.7
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 7.0e-58 228.4 294 56.8
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.2e-56 223.4 230 58.3
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.9e-56 223.0 234 57.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 8.5e-56 221.5 281 52.0
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.1e-55 221.1 282 48.9
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.5e-55 220.7 282 50.4
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 5.5e-55 218.8 282 50.0
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-55 218.8 191 62.3
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 8.0e-54 214.9 272 49.6
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.6e-52 209.9 272 51.1
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 4.4e-52 209.1 294 48.3
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 7.5e-52 208.4 284 48.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 7.5e-52 208.4 245 51.0
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.8e-50 203.8 284 48.6
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 5.4e-50 202.2 228 53.5
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 7.0e-50 201.8 198 60.1
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.2e-49 201.1 260 48.5
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 7.7e-49 198.4 273 49.8
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.5e-47 194.1 215 55.3
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 6.1e-46 188.7 240 47.1
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 5.2e-45 185.7 267 45.3
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 6.8e-45 185.3 274 45.3
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 5.4e-42 175.6 286 47.2
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.0e-40 171.4 276 41.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 2.3e-40 170.2 292 45.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 2.9e-40 169.9 167 58.1
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.9e-39 167.2 146 56.8
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.3e-39 166.4 203 52.2
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.3e-39 166.4 145 61.4
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.6e-38 164.1 158 62.0
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.6e-38 164.1 158 62.0
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 1.4e-37 161.0 154 60.4
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 2.2e-35 153.7 275 38.9
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 3.7e-35 152.9 137 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 8.3e-35 151.8 280 36.4
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 8.3e-35 151.8 263 40.3
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.1e-34 151.4 162 54.3
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 2.7e-33 146.7 241 37.8
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-31 140.6 187 45.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.8e-30 136.7 269 37.2
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.1e-29 134.8 172 52.3
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.4e-29 134.4 175 49.7
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 3.4e-28 129.8 123 52.8
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-26 124.4 121 60.3
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 7.1e-26 122.1 241 37.8
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.0e-24 118.2 142 50.7
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 3.9e-24 116.3 273 33.3
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.9e-23 114.0 163 49.1
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 7.3e-23 112.1 80 71.2
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 2.1e-22 110.5 211 37.9
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.7e-19 100.9 72 70.8
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.4e-13 81.3 112 50.9
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.5e-12 77.8 151 42.4
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 1.5e-12 77.8 144 39.6
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.4e-12 76.6 75 50.7
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 7.6e-12 75.5 192 34.4
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.3e-11 74.7 48 75.0
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.9e-11 72.8 268 28.0
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 5.4e-10 69.3 59 62.7
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.1e-09 67.4 264 29.5
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.7e-09 67.0 72 55.6
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 1.1e-07 61.6 46 69.6
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.5e-07 61.2 77 50.6
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 2.8e-06 57.0 108 38.0
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 6.2e-06 55.8 66 45.5


User provided reference genes

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