Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.7e-302 1042.0 555 100.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.9e-266 922.2 581 89.0
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 5.9e-223 777.7 601 75.4
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 3.6e-212 741.9 598 68.4
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.3e-209 733.4 578 69.2
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.2e-204 716.8 585 68.9
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 3.8e-177 625.5 585 62.2
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 9.3e-168 594.3 573 58.5
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-166 590.1 569 61.3
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.5e-165 586.3 573 57.6
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.8e-164 582.8 574 56.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.2e-162 577.4 575 56.9
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.2e-162 577.4 513 61.6
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 6.5e-161 571.6 571 56.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.2e-160 569.3 512 62.9
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-158 564.3 565 59.6
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 5.7e-157 558.5 572 55.6
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 6.3e-156 555.1 564 56.4
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.5e-154 550.4 569 54.1
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.0e-154 550.1 549 56.5
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 5.9e-154 548.5 535 55.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.2e-153 546.6 562 55.9
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 3.8e-153 545.8 577 55.8
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.2e-151 540.8 528 56.1
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.6e-151 540.4 513 60.4
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 7.9e-151 538.1 563 54.5
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.0e-150 536.2 567 54.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.9e-150 535.8 519 56.5
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 8.8e-150 534.6 520 57.5
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 7.4e-149 531.6 579 54.1
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.7e-149 531.2 520 56.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 9.7e-149 531.2 565 54.2
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.2e-148 530.0 575 53.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 8.2e-148 528.1 569 53.1
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.1e-147 527.7 578 53.3
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.4e-147 526.6 533 54.2
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 4.1e-147 525.8 575 52.9
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 9.1e-147 524.6 575 52.3
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.5e-146 523.9 568 52.5
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.5e-146 523.9 568 52.5
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 4.5e-146 522.3 560 53.8
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.2e-145 520.0 533 53.7
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 2.9e-145 519.6 578 51.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 3.8e-145 519.2 575 53.2
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 5.0e-145 518.8 569 51.8
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 8.5e-145 518.1 577 53.2
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 1.9e-144 516.9 581 53.0
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 7.2e-144 515.0 562 51.8
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 1.8e-142 510.4 634 50.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.7e-142 508.4 531 51.8
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.0e-141 506.9 575 51.7
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.6e-141 506.5 572 51.6
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.3e-140 504.2 583 50.4
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.1e-139 501.1 568 51.2
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 5.9e-138 495.4 566 50.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 5.9e-138 495.4 556 51.3
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.3e-137 494.2 575 52.3
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.9e-136 490.3 512 53.7
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.5e-136 490.0 512 53.5
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.5e-136 490.0 512 53.5
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.2e-135 487.6 567 49.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 4.7e-135 485.7 577 48.2
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 6.1e-135 485.3 567 50.6
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.0e-135 485.0 567 50.4
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 3.0e-134 483.0 570 49.3
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 3.9e-134 482.6 377 68.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.2e-134 482.3 512 53.1
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.5e-133 480.7 519 51.4
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.2e-132 476.9 566 50.2
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.4e-131 473.4 520 52.3
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.0e-130 470.3 573 49.7
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.6e-130 469.9 519 52.2
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.7e-129 467.2 543 49.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 2.9e-129 466.5 507 51.1
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 5.0e-129 465.7 546 49.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 8.5e-129 464.9 518 49.8
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.5e-128 463.4 455 56.7
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 3.2e-128 463.0 579 47.8
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-127 460.7 584 46.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-127 460.7 512 51.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.1e-127 460.3 577 46.8
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 3.6e-127 459.5 502 52.4
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.7e-127 459.1 571 48.5
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-126 456.8 531 47.8
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.0e-126 456.4 568 48.6
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 4.8e-124 449.1 509 49.7
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 8.2e-124 448.4 567 47.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 9.1e-123 444.9 588 45.1
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.5e-122 442.6 552 51.6
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 7.7e-122 441.8 569 46.6
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.7e-121 440.7 561 46.9
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.8e-121 439.5 573 47.8
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 5.0e-121 439.1 522 47.5
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 6.5e-121 438.7 573 47.8
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.9e-120 437.2 573 47.6
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.6e-119 434.1 509 49.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.6e-119 434.1 572 47.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 5.2e-118 429.1 580 45.2
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.4e-117 426.4 515 48.0
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 3.4e-117 426.4 454 53.7
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.4e-115 420.2 389 60.4
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.2e-114 417.9 574 44.8
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.2e-114 417.9 455 54.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.0e-114 417.2 574 44.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.3e-112 409.8 574 43.9
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 5.5e-112 409.1 471 52.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 7.2e-112 408.7 569 43.4
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.6e-111 407.5 521 45.1
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.1e-111 407.1 574 43.6
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 3.6e-111 406.4 580 43.3
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.0e-110 404.8 523 45.1
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.6e-109 400.2 567 43.6
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.8e-109 398.3 520 45.0
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-108 397.9 366 60.9
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 5.4e-107 392.5 570 41.1
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 4.5e-106 389.4 561 43.1
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.7e-105 387.5 538 44.6
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-103 380.9 588 40.8
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.2e-101 374.8 458 47.8
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.9e-100 369.4 446 50.7
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 5.2e-94 349.4 415 48.4
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 7.5e-93 345.5 265 71.3
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.7e-90 337.0 563 39.8
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 3.5e-90 336.7 398 46.2
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.1e-80 305.1 263 62.4
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.8e-74 282.3 508 34.6
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 5.1e-73 279.6 512 35.9
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.2e-68 264.2 399 40.1
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.4e-67 261.5 387 40.3
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.3e-67 258.8 330 47.9
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.7e-60 238.0 250 52.8
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 3.1e-54 217.2 325 39.7
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.6e-50 203.4 531 34.1
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.9e-50 202.6 249 51.0
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.7e-47 193.7 254 46.9
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-46 191.8 154 71.4
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.8e-46 191.4 352 34.7
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-45 188.3 154 70.1
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 4.2e-43 180.3 164 62.8
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.1e-42 177.9 249 39.8
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 3.3e-40 170.6 536 27.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.6e-39 168.3 439 28.2
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 2.2e-36 157.9 155 51.0
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.2e-36 157.9 162 53.7
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 2.2e-36 157.9 527 26.4
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 3.2e-35 154.1 535 26.4
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.1e-34 149.8 147 51.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.3e-33 147.9 211 44.1
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 2.0e-32 144.8 161 44.7
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-30 138.7 144 53.5
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.4e-30 138.7 522 27.2
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 1.0e-28 132.5 162 46.9
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.2e-28 131.3 123 59.3
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.5e-27 127.9 129 51.2
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.5e-27 127.9 119 57.1
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-25 121.3 104 66.3
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.0e-25 120.9 95 69.5
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.3e-24 117.5 101 58.4
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 6.3e-23 113.2 134 51.5
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.0e-22 109.8 146 44.5
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 4.2e-19 100.5 155 34.2
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.5e-19 100.1 160 40.0
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 8.0e-18 96.3 438 25.8
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.0e-18 96.3 84 61.9
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 3.9e-17 94.0 520 22.5
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 5.7e-16 90.1 258 27.5
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 7.4e-16 89.7 105 49.5
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.3e-15 86.7 67 73.1
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 1.6e-13 82.0 134 36.6
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.5e-13 80.9 123 38.2
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 5.9e-13 80.1 68 64.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 7.7e-13 79.7 82 50.0
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.3e-12 79.0 111 38.7
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 1.7e-12 78.6 96 50.0
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.2e-12 78.2 105 44.8
Actinidia17466 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.9e-12 77.8 151 40.4
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.5e-12 76.6 111 38.7
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 8.0e-10 69.7 81 40.7
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-09 68.2 55 63.6
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.8e-07 60.5 65 53.8
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.8e-07 60.5 65 53.8
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.4e-06 58.2 67 49.3


User provided reference genes

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