Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.2e-264 916.0 464 100.0
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 6.5e-239 830.5 464 89.7
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 2.4e-233 812.0 468 89.1
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 1.5e-232 809.3 465 88.6
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 2.5e-227 792.0 464 85.1
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 5.7e-227 790.8 457 86.0
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 6.9e-225 783.9 464 85.3
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 3.4e-224 781.6 464 84.3
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 2.2e-223 778.9 457 84.9
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 2.9e-223 778.5 458 84.5
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.1e-222 776.5 464 84.5
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 1.1e-222 776.5 465 84.1
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.9e-222 775.8 465 84.3
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 2.5e-222 775.4 464 84.1
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.5e-222 775.4 464 83.8
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 3.2e-222 775.0 452 85.6
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 5.5e-222 774.2 464 83.6
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 9.4e-222 773.5 465 83.9
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 9.4e-222 773.5 465 83.9
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.2e-221 773.1 464 83.4
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 3.6e-221 771.5 427 88.8
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 1.4e-220 769.6 464 82.5
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 1.8e-220 769.2 464 82.3
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 3.0e-220 768.5 464 83.6
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 3.0e-220 768.5 463 82.3
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 2.5e-219 765.4 464 83.2
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 3.3e-219 765.0 442 86.9
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 5.7e-219 764.2 430 88.1
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 7.4e-219 763.8 464 83.0
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 7.4e-219 763.8 466 82.2
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 1.7e-218 762.7 427 87.8
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.7e-218 762.7 429 87.2
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 2.8e-218 761.9 464 82.5
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 3.7e-218 761.5 446 85.0
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 4.8e-218 761.1 464 81.7
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 6.3e-218 760.8 456 83.8
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 6.3e-218 760.8 481 81.3
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 6.3e-218 760.8 427 87.8
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 8.2e-218 760.4 464 81.2
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.8e-217 759.2 427 86.9
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.4e-217 758.8 427 87.4
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 3.1e-217 758.4 472 81.4
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 4.1e-217 758.1 427 86.9
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 4.1e-217 758.1 464 82.8
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 1.2e-216 756.5 470 83.4
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.5e-216 756.1 470 80.4
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 7.7e-216 753.8 469 81.7
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 7.7e-216 753.8 464 81.5
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 1.7e-215 752.7 487 79.5
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 3.8e-215 751.5 464 81.2
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 5.0e-215 751.1 427 87.1
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 5.0e-215 751.1 422 86.7
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.1e-214 750.0 464 81.5
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 3.2e-214 748.4 462 82.5
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 4.2e-214 748.0 464 80.2
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 4.2e-214 748.0 427 86.9
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 7.2e-214 747.3 456 82.5
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 2.1e-213 745.7 415 88.2
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 2.7e-213 745.3 455 81.8
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 7.9e-213 743.8 487 78.2
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 1.0e-212 743.4 427 86.2
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 1.8e-212 742.7 446 82.7
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.8e-212 742.7 451 83.1
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 3.9e-212 741.5 463 80.3
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 3.9e-212 741.5 464 79.1
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 3.9e-212 741.5 464 81.0
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.1e-211 740.0 463 79.9
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.5e-211 739.6 464 78.2
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 3.3e-211 738.4 464 78.2
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 4.4e-211 738.0 463 80.1
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 4.4e-211 738.0 468 79.9
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 5.7e-211 737.6 464 78.2
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 9.7e-211 736.9 464 79.1
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 1.7e-210 736.1 463 79.7
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 3.7e-210 734.9 414 88.2
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 3.7e-210 734.9 414 88.2
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 3.7e-210 734.9 468 80.6
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 8.2e-210 733.8 467 78.2
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 1.1e-209 733.4 431 84.2
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 1.4e-209 733.0 439 82.5
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 1.4e-209 733.0 439 82.5
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.4e-209 733.0 467 78.2
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 1.8e-209 732.6 512 74.0
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 2.4e-209 732.3 439 82.5
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 2.4e-209 732.3 439 82.5
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 2.4e-209 732.3 447 81.2
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 5.3e-209 731.1 445 82.2
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 7.0e-209 730.7 438 84.7
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 1.2e-208 729.9 428 83.9
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 1.2e-208 729.9 463 79.0
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 7.7e-208 727.2 435 83.7
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 2.2e-207 725.7 463 78.8
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 2.2e-207 725.7 463 78.8
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 6.5e-207 724.2 486 77.8
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 3.2e-206 721.8 464 78.2
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 7.2e-206 720.7 419 83.5
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.7e-205 718.8 470 76.8
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 3.3e-203 711.8 427 82.0
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 3.7e-202 708.4 391 88.7
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 2.9e-199 698.7 465 76.3
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.6e-197 691.8 465 77.2
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 2.0e-195 686.0 384 88.3
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.4e-193 679.9 384 87.2
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 2.9e-191 672.2 454 74.7
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 7.2e-190 667.5 405 83.5
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 4.7e-189 664.8 456 74.1
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 1.8e-188 662.9 541 66.4
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 9.8e-187 657.1 463 73.2
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 4.9e-186 654.8 463 74.1
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 6.3e-186 654.4 463 72.6
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 1.8e-185 652.9 464 73.3
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 2.9e-183 645.6 414 78.7
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 3.6e-181 638.6 465 71.8
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 5.4e-177 624.8 494 69.0
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 2.0e-176 622.9 412 76.0
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 7.8e-176 620.9 436 73.2
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 2.3e-175 619.4 413 74.8
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.5e-174 616.7 588 60.2
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.2e-171 607.1 447 68.9
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 1.4e-161 573.5 425 70.6
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.9e-145 520.0 301 86.0
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 2.1e-144 516.5 428 59.6
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 9.0e-140 501.1 330 77.0
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 1.4e-129 467.2 411 57.7
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 1.5e-123 447.2 407 58.5
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 2.9e-122 443.0 369 61.5
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.1e-112 410.2 254 82.3
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.8e-111 407.1 261 77.8
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.6e-109 400.6 444 50.2
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.9e-105 387.1 446 51.1
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 1.3e-82 311.2 173 89.6
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 1.6e-80 304.3 316 55.1
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 5.7e-78 295.8 188 80.9
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 7.5e-78 295.4 387 43.2
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.6e-59 234.6 358 39.9
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 5.0e-58 229.6 161 68.9
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 8.3e-45 185.7 117 79.5
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.1e-44 185.3 385 34.3
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 6.9e-31 139.4 72 93.1
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 4.4e-30 136.7 152 50.0
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 7.1e-28 129.4 69 87.0
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 1.6e-27 128.3 81 82.7
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 1.1e-20 105.5 66 84.8
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 1.4e-20 105.1 100 60.0
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 2.4e-20 104.4 76 69.7
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.1e-17 95.5 296 28.7
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 1.1e-15 89.0 61 73.8
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 4.0e-15 87.0 59 76.3
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 1.0e-10 72.4 46 71.7
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 8.2e-08 62.8 68 48.5
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 8.2e-08 62.8 68 48.5
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 1.4e-07 62.0 81 49.4
AUR62002710 Chenopodium quinoa HOM05D004870 ORTHO05D138226 2.4e-07 61.2 60 53.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 2.6e-06 57.8 157 28.0
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 4.5e-06 57.0 156 29.5
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 4.5e-06 57.0 223 24.7
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 5.8e-06 56.6 156 28.8
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 5.8e-06 56.6 157 28.7
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 7.6e-06 56.2 157 28.0
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 7.6e-06 56.2 162 27.8
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 1.0e-05 55.8 157 28.0
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.0e-05 55.8 157 28.0


User provided reference genes

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