Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 0.0e+00 1365.5 686 100.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.7e-257 892.1 835 60.8
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.9e-256 888.3 784 62.2
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 8.6e-248 860.5 840 58.5
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.7e-240 836.3 810 58.5
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 4.0e-237 825.1 827 56.8
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.6e-230 803.1 823 55.5
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.3e-211 740.3 760 56.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.5e-207 726.9 847 51.9
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.5e-180 637.1 811 46.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 5.9e-180 635.2 826 45.9
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.4e-178 630.6 774 49.5
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.6e-177 627.1 833 45.6
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.0e-176 624.4 821 45.6
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.1e-173 614.4 811 45.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.4e-173 614.0 842 44.4
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.4e-173 613.2 811 45.5
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.0e-171 607.8 812 45.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.7e-169 599.0 807 45.5
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 5.7e-167 592.0 807 45.5
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 9.7e-167 591.3 801 44.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 6.3e-166 588.6 802 45.4
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.3e-166 588.6 831 44.4
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.4e-165 587.4 775 46.5
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.0e-163 581.3 834 43.8
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.3e-163 580.9 824 44.5
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.7e-163 580.5 733 47.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.5e-162 577.4 810 44.8
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.2e-162 575.9 806 45.3
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.1e-161 573.5 844 41.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 3.0e-160 569.7 822 43.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.0e-160 569.7 822 44.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.8e-160 568.5 813 44.4
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.5e-159 567.4 736 46.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.5e-159 567.4 846 42.1
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 9.8e-159 564.7 802 45.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 9.8e-159 564.7 822 43.4
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.8e-158 563.1 789 44.0
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.3e-158 561.6 799 42.4
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.1e-157 559.7 853 42.6
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.6e-156 557.4 819 43.6
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 5.0e-155 552.4 798 43.5
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.9e-154 550.4 765 44.6
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 7.2e-154 548.5 819 43.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 9.5e-154 548.1 996 37.4
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.0e-151 540.4 809 41.4
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.6e-151 540.0 720 46.1
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 9.2e-149 531.6 807 41.3
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.2e-148 531.2 819 41.3
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 2.7e-148 530.0 806 42.1
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 5.9e-148 528.9 974 37.3
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.3e-146 523.1 782 44.1
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 2.8e-145 520.0 803 41.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.4e-144 517.7 919 39.0
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 2.6e-143 513.5 802 41.9
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.7e-142 510.8 855 39.1
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 1.4e-141 507.7 850 39.4
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 2.4e-141 506.9 811 40.3
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 5.4e-141 505.8 814 41.4
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 5.9e-140 502.3 759 41.8
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.0e-139 500.0 831 38.5
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.9e-139 499.6 831 38.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 6.6e-139 498.8 831 40.2
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.5e-138 497.7 927 37.0
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.1e-137 493.8 801 40.3
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 8.0e-137 491.9 719 43.5
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.1e-136 491.5 1024 35.6
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.3e-136 490.3 832 39.5
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 8.9e-136 488.4 811 39.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 7.5e-135 485.3 820 38.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.5e-135 485.3 794 39.8
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 7.5e-135 485.3 800 40.2
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 9.8e-135 485.0 811 39.6
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.9e-134 482.6 805 39.5
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.4e-133 480.3 679 44.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.6e-132 477.6 796 39.2
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 1.7e-131 474.2 791 39.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.9e-131 473.0 918 36.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.6e-131 472.2 910 35.7
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 6.6e-131 472.2 816 38.7
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 5.6e-130 469.2 720 41.7
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.6e-127 460.3 818 37.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.4e-127 459.9 699 44.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 2.4e-120 437.2 776 37.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 9.9e-119 431.8 551 44.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.2e-117 426.8 965 33.7
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 7.1e-117 425.6 792 36.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.8e-116 422.2 771 36.4
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.5e-114 417.9 832 35.6
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.3e-114 416.8 817 35.3
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.4e-112 410.6 718 40.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 6.9e-112 409.1 778 36.5
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.4e-111 406.4 578 46.9
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 3.2e-109 400.2 674 37.4
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.7e-107 394.4 719 36.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 2.2e-102 377.5 715 36.8
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.7e-100 370.5 286 66.1
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.3e-98 363.6 653 40.6
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.2e-87 328.6 433 46.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-86 325.1 698 35.1
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 1.7e-86 324.7 478 41.4
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.1e-84 317.8 432 44.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.0e-83 315.5 635 35.3
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.9e-82 311.2 693 32.9
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 5.5e-77 293.1 836 29.7
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.6e-76 291.6 657 34.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 6.7e-75 286.2 472 39.2
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.5e-74 285.0 715 32.0
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.5e-74 284.3 616 34.3
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.2e-73 281.2 496 37.3
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.1e-72 278.9 470 38.9
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 7.7e-71 272.7 428 45.1
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 5.0e-70 270.0 410 42.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.8e-67 261.5 752 29.5
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.5e-66 258.5 453 38.2
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 3.3e-66 257.3 440 38.4
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 7.4e-66 256.1 460 38.9
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.7e-65 253.8 439 39.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 4.8e-65 253.4 449 39.2
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.1e-64 252.3 416 39.4
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 3.1e-64 250.8 466 38.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.1e-64 250.8 447 39.1
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 9.1e-64 249.2 444 40.1
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-63 248.8 398 40.7
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.2e-63 248.8 398 40.7
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 4.5e-63 246.9 451 38.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 7.7e-63 246.1 438 38.8
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.0e-62 243.4 445 36.9
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.4e-61 241.9 413 37.8
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 5.5e-61 240.0 359 41.2
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 8.0e-60 236.1 394 39.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.0e-59 235.7 407 38.1
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-59 235.3 396 39.6
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.7e-58 229.9 395 39.0
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 6.3e-57 226.5 375 40.0
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.6e-55 221.9 434 35.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 4.7e-52 210.3 846 25.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.8e-51 208.4 397 38.0
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.0e-51 207.2 401 38.9
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.2e-50 205.7 193 60.1
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 7.5e-50 203.0 408 36.8
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.7e-47 194.5 229 52.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 9.4e-45 186.0 737 26.1
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.5e-42 178.7 357 31.4
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.7e-41 175.3 748 25.0
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.6e-39 168.7 120 75.0
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.7e-39 167.9 105 71.4
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.5e-37 162.2 467 31.7
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 1.6e-36 158.7 103 68.9
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.7e-36 157.1 170 54.1
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 7.0e-32 143.3 185 48.1
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.6e-31 142.1 190 45.8
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.1e-29 136.0 645 24.2
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 5.4e-24 117.1 179 34.1
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-14 85.9 97 43.3
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.9e-14 84.3 83 51.8
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 6.6e-14 83.6 69 52.2
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.5e-10 72.4 50 74.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.7e-09 67.8 64 40.6
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 4.9e-09 67.4 96 46.9
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.7e-07 61.6 50 58.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 6.0e-07 60.5 50 56.0
Nn1g05401 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.0e-06 59.7 37 75.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.9e-06 57.8 48 41.7
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 8.6e-06 56.6 54 44.4


User provided reference genes

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