Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 9.1e-193 676.8 356 100.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.6e-168 594.7 356 83.1
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 9.5e-166 587.0 358 83.5
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 9.5e-166 587.0 349 88.0
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.3e-162 576.6 320 86.6
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 4.1e-161 571.6 332 84.3
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 2.1e-160 569.3 328 85.7
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 4.6e-160 568.2 320 85.6
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 6.0e-160 567.8 329 83.3
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 3.9e-159 565.1 328 83.5
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 6.6e-159 564.3 330 82.1
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.5e-158 563.1 322 85.1
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.5e-158 563.1 319 84.6
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 1.9e-158 562.8 327 83.2
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 4.3e-158 561.6 331 81.3
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 4.3e-158 561.6 331 83.7
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 5.6e-158 561.2 318 85.5
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 1.6e-157 559.7 328 82.9
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 2.1e-157 559.3 356 81.2
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 2.1e-157 559.3 320 85.0
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 3.6e-157 558.5 327 82.6
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.1e-156 557.0 331 81.3
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.4e-156 556.6 327 82.6
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.8e-156 556.2 321 84.1
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.8e-156 556.2 319 84.0
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 3.1e-156 555.4 325 82.2
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.1e-156 555.4 327 82.0
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 4.0e-156 555.1 325 80.6
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 4.0e-156 555.1 324 84.0
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 5.2e-156 554.7 329 83.3
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 5.2e-156 554.7 319 84.0
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 6.8e-156 554.3 322 83.2
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 6.8e-156 554.3 328 82.0
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 8.9e-156 553.9 347 79.3
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.2e-155 553.5 320 84.7
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 2.6e-155 552.4 324 81.5
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.4e-155 552.0 331 81.3
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 4.4e-155 551.6 319 83.4
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 5.8e-155 551.2 324 81.8
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 9.9e-155 550.4 327 80.7
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 9.9e-155 550.4 332 81.3
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.3e-154 550.1 329 82.4
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.7e-154 549.7 320 84.1
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.7e-154 549.7 325 81.2
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 2.9e-154 548.9 319 82.8
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 3.8e-154 548.5 318 84.0
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 3.8e-154 548.5 331 81.6
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 4.9e-154 548.1 335 81.8
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 8.4e-154 547.4 335 81.5
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 8.4e-154 547.4 335 81.5
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 1.1e-153 547.0 321 81.6
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 1.1e-153 547.0 321 81.6
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.1e-153 547.0 322 80.4
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.4e-153 546.6 335 81.5
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.4e-153 546.6 318 83.6
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.4e-153 545.8 329 79.3
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 9.3e-153 543.9 324 79.0
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.2e-152 543.5 335 81.2
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.2e-152 543.5 318 81.8
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 2.7e-152 542.3 321 82.9
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.7e-152 542.3 331 79.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 2.7e-152 542.3 320 80.9
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 4.6e-152 541.6 320 83.1
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.3e-151 539.3 325 81.2
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.0e-151 538.9 332 79.5
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 8.7e-151 537.3 320 79.4
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.9e-150 536.2 328 78.0
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 3.3e-150 535.4 320 81.2
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 9.6e-150 533.9 347 75.8
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 5.3e-148 528.1 326 78.5
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.5e-147 526.6 327 76.5
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 9.9e-147 523.9 319 77.4
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 4.9e-146 521.5 352 79.8
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-145 520.4 326 75.8
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 4.2e-145 518.5 323 77.4
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 3.5e-144 515.4 321 76.9
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 6.0e-144 514.6 319 77.4
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 7.9e-144 514.2 321 77.9
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 1.0e-143 513.8 328 77.7
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 1.3e-143 513.5 321 77.9
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.3e-143 512.7 328 77.4
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 3.9e-143 511.9 323 77.4
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 2.5e-142 509.2 319 77.4
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 3.3e-142 508.8 322 77.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 5.6e-142 508.1 322 77.0
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 7.3e-142 507.7 320 77.2
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 7.3e-142 507.7 321 77.3
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.4e-140 503.4 320 75.0
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 1.8e-140 503.1 329 74.2
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.4e-140 502.7 322 76.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 9.0e-140 500.7 286 85.7
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 1.5e-139 500.0 286 85.3
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 7.6e-139 497.7 305 79.0
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.6e-136 490.0 326 72.7
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 3.0e-135 485.7 352 67.6
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 6.7e-135 484.6 288 81.6
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 4.3e-134 481.9 285 81.1
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 6.2e-133 478.0 320 76.9
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 4.5e-131 471.9 289 78.9
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.1e-128 463.0 263 82.9
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 4.6e-128 461.8 255 85.9
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.0e-127 460.7 263 82.5
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 7.4e-126 454.5 356 67.7
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.6e-125 453.4 262 82.1
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 3.7e-125 452.2 340 68.5
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 5.1e-119 431.8 270 79.3
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.7e-119 431.4 263 78.3
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 3.3e-110 402.5 229 83.8
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 2.8e-109 399.4 227 87.2
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.5e-107 393.7 322 61.2
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.5e-107 393.7 322 59.6
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 1.1e-102 377.5 332 57.2
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.8e-84 317.0 297 55.2
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 3.5e-83 312.8 168 89.3
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.3e-79 300.1 213 66.2
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 3.0e-79 299.7 284 59.2
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.5e-75 286.2 172 81.4
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.8e-64 250.0 145 82.8
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 4.0e-63 246.1 212 57.5
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 2.4e-60 236.9 215 61.9
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 8.3e-53 211.8 323 38.1
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.2e-52 209.9 244 47.5
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.5e-49 201.1 199 55.8
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 9.5e-49 198.4 313 45.0
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.3e-42 177.9 394 32.2
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 3.3e-41 173.3 114 73.7
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 4.9e-37 159.5 230 48.3
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.9e-36 157.5 103 73.8
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 1.6e-35 154.5 318 35.2
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.4e-20 104.8 57 87.7
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 3.0e-18 97.1 250 31.6
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.5e-17 94.0 98 53.1
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 6.9e-15 85.9 55 78.2
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 9.0e-15 85.5 45 88.9
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 1.6e-11 74.7 78 51.3
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 3.1e-07 60.5 30 83.3
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.4e-06 57.0 44 68.2


User provided reference genes

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