Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 8.6e-218 760.0 374 100.0
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 3.8e-189 664.8 376 87.5
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.1e-187 659.1 376 86.2
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 5.3e-183 644.4 374 84.0
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 2.6e-182 642.1 374 83.7
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 4.5e-182 641.3 374 83.4
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.3e-181 639.8 374 84.5
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 2.2e-181 639.0 374 82.6
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.8e-181 638.3 374 82.9
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 4.9e-181 637.9 374 81.3
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 6.5e-181 637.5 374 82.9
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.4e-180 636.3 374 83.7
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.4e-180 636.3 377 82.0
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 2.5e-180 635.6 377 82.0
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 5.5e-180 634.4 375 83.7
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 5.5e-180 634.4 376 83.5
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 7.1e-180 634.0 373 82.8
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 7.1e-180 634.0 377 81.7
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.1e-179 632.5 388 81.4
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 7.9e-179 630.6 374 83.2
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 7.9e-179 630.6 374 81.8
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.3e-178 629.0 374 82.6
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.0e-178 628.6 377 83.0
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 3.9e-178 628.2 374 81.6
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 8.7e-178 627.1 375 81.6
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.9e-177 625.9 375 81.3
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 2.5e-177 625.5 374 81.8
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 2.5e-177 625.5 374 82.4
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 3.3e-177 625.2 377 81.4
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 7.4e-177 624.0 374 82.1
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 7.4e-177 624.0 375 81.3
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 9.7e-177 623.6 374 81.0
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.3e-176 623.2 374 81.6
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 1.3e-176 623.2 374 81.8
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 1.3e-176 623.2 374 82.1
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.6e-176 622.9 374 81.8
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.6e-176 622.9 374 81.8
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 1.6e-176 622.9 374 81.6
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.6e-176 622.9 374 82.1
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.6e-176 622.9 374 81.3
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.2e-176 622.5 355 85.4
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 4.8e-176 621.3 374 81.8
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 4.8e-176 621.3 377 81.7
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 8.2e-176 620.5 374 81.8
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 1.1e-175 620.2 374 80.7
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 1.4e-175 619.8 374 81.0
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.8e-175 619.4 374 81.6
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 3.1e-175 618.6 374 81.3
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 5.3e-175 617.8 374 81.8
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.2e-174 616.7 374 80.2
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.2e-174 616.7 374 81.3
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.5e-174 616.3 374 81.3
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.5e-174 616.3 374 81.3
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.6e-174 615.5 374 80.7
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 3.4e-174 615.1 374 79.4
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 4.5e-174 614.8 381 80.3
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.0e-173 613.6 375 80.0
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.3e-173 613.2 374 81.6
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.7e-173 612.8 375 80.0
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 2.9e-173 612.1 391 78.5
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 2.9e-173 612.1 401 75.8
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 3.8e-173 611.7 375 79.2
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 8.5e-173 610.5 375 79.5
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.1e-172 610.1 375 80.3
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.2e-172 608.2 375 79.7
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.2e-172 608.2 375 79.7
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.2e-171 606.7 373 81.0
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 1.2e-171 606.7 373 78.3
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 1.6e-171 606.3 363 82.1
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 2.1e-171 605.9 374 77.3
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 6.1e-171 604.4 375 78.7
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 7.9e-171 604.0 413 73.6
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 7.9e-171 604.0 374 78.6
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 1.0e-170 603.6 365 81.1
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.0e-170 603.6 375 78.1
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 1.8e-170 602.8 374 78.9
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 1.8e-170 602.8 359 83.3
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 3.9e-170 601.7 374 80.2
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.1e-169 600.1 374 80.5
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 4.3e-169 598.2 374 77.8
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 5.7e-169 597.8 361 80.6
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.7e-169 597.8 373 79.4
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 7.4e-169 597.4 374 78.9
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 7.4e-169 597.4 375 78.1
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.2e-168 595.9 375 79.2
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 2.8e-168 595.5 375 79.2
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 2.8e-168 595.5 373 79.6
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.8e-168 595.5 361 80.1
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 4.8e-168 594.7 374 78.3
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 6.3e-168 594.3 361 78.9
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 8.2e-168 594.0 375 78.9
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 4.1e-167 591.7 354 82.2
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 6.9e-167 590.9 374 77.5
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 1.2e-166 590.1 361 79.2
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.5e-166 589.7 360 78.9
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.6e-166 589.0 373 79.4
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.4e-166 588.6 361 79.8
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 3.4e-166 588.6 361 78.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 4.5e-166 588.2 375 77.3
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 4.5e-166 588.2 375 77.3
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 4.5e-166 588.2 357 80.7
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.0e-165 587.0 374 77.3
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.7e-165 586.3 360 79.2
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 2.2e-165 585.9 360 78.3
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 2.2e-165 585.9 360 78.3
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 2.2e-165 585.9 360 78.3
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 2.2e-165 585.9 360 78.3
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 2.2e-165 585.9 360 78.3
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.1e-164 583.6 374 77.0
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 2.5e-164 582.4 374 76.5
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 3.2e-164 582.0 375 76.5
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 9.4e-164 580.5 374 75.7
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 2.1e-163 579.3 424 69.8
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 7.9e-163 577.4 406 72.9
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.4e-162 576.6 362 79.0
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.4e-162 576.6 376 77.4
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 4.4e-161 571.6 372 73.9
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 2.2e-160 569.3 372 73.9
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.7e-160 568.5 375 75.5
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 4.8e-160 568.2 373 75.6
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 8.2e-160 567.4 375 75.5
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.1e-159 567.0 362 77.1
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.4e-159 565.8 355 79.2
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 9.1e-159 563.9 375 74.1
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 9.1e-159 563.9 360 77.8
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 4.5e-158 561.6 374 74.6
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 3.2e-156 555.4 364 74.5
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 7.2e-156 554.3 375 74.1
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.6e-155 552.0 355 77.2
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 4.7e-155 551.6 356 74.7
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 6.1e-155 551.2 367 72.8
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.0e-154 548.9 361 74.2
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 3.0e-154 548.9 361 74.0
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 5.7e-153 544.7 355 75.8
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.8e-151 539.7 360 73.6
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 1.6e-150 536.6 364 74.7
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 3.1e-143 512.3 288 85.8
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.6e-142 510.0 361 67.9
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.0e-142 509.6 374 65.5
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.5e-142 508.8 375 65.1
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 4.5e-142 508.4 374 66.0
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 3.8e-141 505.4 365 68.2
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 3.8e-141 505.4 375 65.1
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 4.2e-140 501.9 401 67.1
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 4.7e-139 498.4 325 74.5
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 5.2e-138 495.0 372 68.0
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 5.7e-137 491.5 283 82.3
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 1.7e-136 490.0 376 63.8
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.0e-134 483.0 358 66.2
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 2.3e-133 479.6 375 62.7
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 1.6e-131 473.4 283 82.0
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 3.4e-129 465.7 344 69.5
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 5.7e-129 464.9 360 63.6
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.3e-128 463.8 327 70.9
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 2.2e-128 463.0 269 84.0
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 2.4e-127 459.5 277 80.5
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 2.8e-123 446.0 285 77.9
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 2.8e-123 446.0 284 77.5
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 8.0e-123 444.5 239 88.3
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 3.2e-119 432.6 377 56.8
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 6.6e-117 424.9 275 77.1
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 7.5e-113 411.4 357 55.7
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.2e-110 404.1 270 72.6
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 2.7e-110 402.9 393 53.4
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.9e-109 399.1 359 55.7
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 1.1e-108 397.5 285 68.1
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.8e-98 363.6 197 89.3
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 4.3e-92 342.4 273 64.8
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 7.6e-89 331.6 200 80.0
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 2.5e-84 316.6 177 84.7
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 5.3e-82 308.9 202 76.7
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 1.3e-61 241.1 175 72.0
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 3.3e-60 236.5 266 53.4
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.4e-49 199.9 373 33.5
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 9.7e-44 181.8 113 79.6
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 3.7e-43 179.9 441 28.3
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.8e-42 177.6 419 26.3
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 4.1e-42 176.4 120 70.0
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 5.9e-41 172.6 148 62.2
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.0e-40 171.8 124 66.1
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 5.7e-36 156.0 115 66.1
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 9.1e-34 148.7 297 30.6
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 3.4e-20 103.6 88 59.1
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 7.0e-10 69.3 49 73.5
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 1.7e-08 64.7 198 30.8


User provided reference genes

Program Settings