Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 6.9e-30 133.3 65 100.0
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.9e-27 125.2 65 95.4
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.1e-25 117.1 64 89.1
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.1e-25 117.1 64 89.1
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.5e-21 104.0 61 77.0
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.5e-21 104.0 61 77.0
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 2.5e-19 98.2 64 71.9
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 2.1e-18 95.1 61 75.4
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 2.1e-18 95.1 64 70.3
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.3e-17 92.4 60 75.0
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 3.9e-17 90.9 61 70.5
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 5.1e-17 90.5 61 70.5
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 6.7e-17 90.1 61 65.6
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 6.7e-17 90.1 61 67.2
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 8.7e-17 89.7 61 72.1
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 1.1e-16 89.4 61 63.9
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 2.5e-16 88.2 61 67.2
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.5e-16 88.2 61 67.2
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 2.5e-16 88.2 64 62.5
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 4.3e-16 87.4 61 63.9
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 5.7e-16 87.0 61 70.5
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 7.4e-16 86.7 64 64.1
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.3e-15 85.9 61 65.6
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 1.6e-15 85.5 61 67.2
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 2.1e-15 85.1 61 62.3
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 2.1e-15 85.1 61 62.3
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 3.7e-15 84.3 61 62.3
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 3.7e-15 84.3 61 67.2
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 3.7e-15 84.3 61 63.9
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 3.7e-15 84.3 61 63.9
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 4.8e-15 84.0 61 63.9
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 4.8e-15 84.0 61 67.2
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 6.3e-15 83.6 61 65.6
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 6.3e-15 83.6 61 62.3
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 8.2e-15 83.2 61 62.3
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 8.2e-15 83.2 61 62.3
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 8.2e-15 83.2 61 60.7
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 8.2e-15 83.2 64 57.8
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 8.2e-15 83.2 64 57.8
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 8.2e-15 83.2 61 62.3
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 8.2e-15 83.2 61 65.6
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 1.1e-14 82.8 61 62.3
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 1.1e-14 82.8 61 60.7
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 1.4e-14 82.4 61 60.7
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.4e-14 82.4 60 61.7
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 1.4e-14 82.4 60 63.3
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 1.4e-14 82.4 61 60.7
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 1.8e-14 82.0 61 60.7
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 1.8e-14 82.0 61 60.7
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 1.8e-14 82.0 61 59.0
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 1.8e-14 82.0 61 57.4
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.8e-14 82.0 61 62.3
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.4e-14 81.6 61 62.3
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 3.1e-14 81.3 61 57.4
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 3.1e-14 81.3 61 63.9
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 3.1e-14 81.3 61 59.0
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 3.1e-14 81.3 61 62.3
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 4.1e-14 80.9 64 54.7
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 4.1e-14 80.9 64 54.7
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 4.1e-14 80.9 61 62.3
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 6.9e-14 80.1 61 63.9
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 6.9e-14 80.1 61 59.0
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 9.0e-14 79.7 64 57.8
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 2.0e-13 78.6 61 60.7
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.4e-13 77.8 61 60.7
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 3.4e-13 77.8 61 59.0
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 3.4e-13 77.8 60 58.3
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 5.9e-13 77.0 61 60.7
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 5.9e-13 77.0 61 60.7
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 7.6e-13 76.6 61 55.7
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 7.6e-13 76.6 61 60.7
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 7.6e-13 76.6 61 59.0
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-12 75.9 61 57.4
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-12 75.9 61 59.0
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 1.7e-12 75.5 64 51.6
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 2.2e-12 75.1 61 54.1
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 2.9e-12 74.7 53 58.5
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 3.8e-12 74.3 61 50.8
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 3.8e-12 74.3 61 50.8
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 3.8e-12 74.3 61 54.1
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.0e-12 73.9 61 55.7
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 6.5e-12 73.6 61 49.2
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.5e-12 73.6 61 57.4
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 1.1e-11 72.8 62 56.5
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 1.4e-11 72.4 61 49.2
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.4e-11 72.4 61 55.7
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 4.2e-11 70.9 61 55.7
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 4.2e-11 70.9 61 55.7
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.2e-11 70.9 62 54.8
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 7.2e-11 70.1 61 49.2
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 1.2e-10 69.3 61 45.9
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 1.2e-10 69.3 61 47.5
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 3.5e-10 67.8 61 47.5
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 3.5e-10 67.8 61 45.9
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 6.1e-10 67.0 59 50.8
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 1.0e-09 66.2 64 48.4
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 5.1e-09 63.9 61 49.2
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-08 62.8 49 55.1
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 1.9e-08 62.0 49 53.1
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.9e-08 62.0 49 53.1
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 2.5e-08 61.6 49 55.1
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-08 61.6 49 55.1
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 5.7e-08 60.5 51 47.1
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 5.7e-08 60.5 49 53.1
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 5.7e-08 60.5 61 55.7
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 7.4e-08 60.1 49 53.1
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-07 59.3 49 53.1
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 3.7e-07 57.8 53 49.1
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.2e-07 56.6 49 49.0
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 4.1e-06 54.3 61 49.2


User provided reference genes

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