Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 0.0e+00 1568.5 785 100.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 0.0e+00 1522.3 785 97.7
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.5e-309 1064.3 785 71.7
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 7.4e-304 1047.0 773 71.3
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.6e-298 1029.2 757 72.1
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 1.3e-292 1009.6 779 68.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.8e-273 946.0 721 70.3
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.0e-261 906.0 801 62.9
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.2e-253 880.2 784 62.2
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.4e-224 782.3 735 60.0
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.2e-218 761.5 803 54.5
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 9.9e-216 754.2 802 53.2
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.9e-211 740.0 790 52.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.1e-209 734.2 787 51.8
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.6e-208 729.6 794 52.8
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 4.5e-208 728.8 789 51.3
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.7e-207 726.9 801 51.7
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.5e-203 713.8 796 51.3
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 5.7e-203 711.8 792 51.9
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.1e-202 709.9 796 51.6
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.7e-199 700.3 796 50.6
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.9e-198 696.8 788 50.8
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.3e-198 694.5 782 51.7
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.2e-197 694.1 793 50.7
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.2e-197 694.1 793 50.3
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.6e-197 692.6 793 50.2
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 4.6e-197 692.2 787 51.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.3e-195 685.6 801 49.9
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 5.7e-195 685.3 789 50.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.4e-193 680.6 803 49.3
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.1e-193 679.1 821 49.8
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.4e-192 676.0 796 50.9
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.6e-189 665.6 809 49.8
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 4.6e-189 665.6 789 49.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.9e-188 662.5 792 49.6
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.7e-187 658.7 794 48.9
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 3.1e-185 652.9 803 48.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 5.0e-183 645.6 791 49.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.2e-182 642.9 794 48.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 7.2e-182 641.7 814 48.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.1e-181 640.2 946 43.3
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 1.1e-179 634.4 805 47.1
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.5e-179 634.0 786 49.4
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.6e-179 633.3 827 47.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 2.8e-178 629.8 866 44.2
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 3.1e-177 626.3 819 47.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.1e-177 625.9 785 46.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 7.0e-177 625.2 928 43.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.1e-174 617.8 773 48.5
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.5e-174 616.7 794 46.5
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.6e-173 614.0 801 46.2
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.1e-173 613.6 792 46.0
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.7e-173 613.2 699 53.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 8.0e-173 611.7 757 48.0
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 6.7e-172 608.6 787 45.9
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.0e-171 607.1 770 46.4
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.3e-170 604.4 796 45.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 6.5e-167 592.0 796 45.2
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 5.5e-166 589.0 899 42.6
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.7e-165 586.6 791 46.0
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 8.0e-165 585.1 794 44.3
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.0e-164 583.2 799 43.1
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 5.2e-164 582.4 794 44.1
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.6e-163 580.1 799 43.2
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.6e-163 580.1 808 45.7
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 5.7e-163 578.9 820 42.6
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.3e-162 577.8 788 44.4
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 3.7e-162 576.2 985 39.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.8e-162 575.9 812 43.0
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 3.1e-161 573.2 806 45.3
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.0e-160 570.5 790 43.2
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.5e-158 564.3 881 41.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.9e-158 563.9 897 41.6
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.1e-157 560.5 789 43.2
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 4.9e-154 549.3 801 42.2
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.5e-150 537.7 836 40.4
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.3e-150 536.6 790 43.5
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 7.3e-150 535.4 692 48.0
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.1e-149 533.9 824 39.7
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.2e-147 528.1 793 41.4
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.5e-147 527.7 667 47.1
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.2e-146 523.9 568 52.1
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 8.3e-146 521.9 802 40.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.4e-145 520.4 798 42.0
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.6e-144 517.7 938 38.7
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 3.9e-143 513.1 792 40.9
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 5.0e-143 512.7 840 40.6
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 9.5e-142 508.4 799 40.9
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.2e-141 508.1 781 41.0
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.2e-139 501.5 350 72.9
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.7e-138 497.7 797 40.9
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.3e-134 483.0 605 49.8
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.8e-125 453.8 795 38.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.8e-122 443.4 811 37.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.7e-114 417.9 789 35.4
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 6.4e-114 416.0 790 36.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.4e-113 414.8 766 37.3
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 1.9e-113 414.5 502 48.6
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.9e-113 414.5 833 36.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.3e-108 396.4 655 40.9
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.1e-102 378.6 573 42.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.1e-102 378.6 627 38.9
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.6e-101 374.8 384 56.0
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 3.9e-95 353.6 526 42.4
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 5.1e-95 353.2 664 36.7
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.6e-94 349.7 782 34.0
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.3e-92 343.2 434 47.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 4.5e-91 340.1 673 37.1
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 5.5e-89 333.2 828 31.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.5e-75 288.5 441 41.5
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.4e-75 287.3 765 31.5
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.5e-73 281.2 436 39.7
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.5e-73 281.2 477 39.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 5.5e-73 280.0 439 39.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.0e-71 275.8 794 28.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.4e-71 275.4 542 35.8
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.0e-70 271.6 434 38.5
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.2e-69 268.1 449 39.0
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 7.0e-68 263.1 555 33.2
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 2.6e-67 261.2 438 37.4
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.6e-67 261.2 438 38.1
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.3e-66 258.8 749 31.0
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.1e-65 255.8 498 36.5
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.2e-65 254.2 439 37.1
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 7.2e-65 253.1 444 37.6
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 9.4e-65 252.7 591 32.8
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-64 251.9 437 37.8
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.6e-64 251.9 251 59.0
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 8.0e-64 249.6 444 37.4
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 6.7e-63 246.5 443 35.9
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 6.7e-63 246.5 443 35.9
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.0e-62 245.0 444 36.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.0e-59 235.0 544 33.1
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.9e-58 231.1 669 30.9
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.0e-58 230.3 810 28.0
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.6e-56 224.2 606 31.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 4.8e-53 213.8 447 35.8
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 9.1e-52 209.5 652 29.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 9.1e-52 209.5 652 29.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.2e-51 209.1 537 30.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.2e-51 209.1 450 33.3
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.3e-50 205.7 638 31.0
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 6.6e-42 176.8 100 73.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.0e-40 169.9 468 27.8
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.2e-38 166.0 193 49.7
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.4e-38 164.5 442 29.4
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 4.4e-38 164.1 105 68.6
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.8e-37 161.4 211 48.8
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 6.3e-37 160.2 483 26.3
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.2e-28 131.3 352 31.5
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.0e-26 124.8 179 35.8
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.1e-25 122.9 350 32.6
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.1e-25 122.9 80 72.5
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.3e-25 120.9 381 25.7
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.8e-24 118.2 100 56.0
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.8e-15 87.0 72 45.8
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.2e-14 86.3 73 50.7
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.5e-11 74.7 83 44.6
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.0e-11 73.9 71 36.6
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-09 67.4 108 32.4
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 2.4e-07 62.0 58 39.7
Nn1g05401 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.8e-06 57.4 37 70.3
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 5.8e-06 57.4 44 59.1
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 7.6e-06 57.0 62 40.3
Cre05.g235400 Chlamydomonas reinhardtii HOM05D021426 ORTHO05D000301 9.9e-06 56.6 69 44.9


User provided reference genes

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