Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 4.4e-30 134.8 120 100.0
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 8.5e-26 120.6 122 90.2
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 2.5e-25 119.0 67 89.6
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 4.2e-25 118.2 67 89.6
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 9.4e-25 117.1 67 88.1
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 2.7e-24 115.5 120 85.8
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 3.6e-24 115.2 67 89.6
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 3.6e-24 115.2 119 88.2
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.6e-24 115.2 67 88.1
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 4.7e-24 114.8 67 88.1
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 4.7e-24 114.8 67 86.6
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 1.0e-23 113.6 121 90.9
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 1.0e-23 113.6 67 85.1
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 1.4e-23 113.2 122 80.3
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 1.4e-23 113.2 122 90.2
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.4e-23 113.2 67 83.6
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.4e-23 113.2 67 83.6
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.4e-23 113.2 67 85.1
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.4e-23 113.2 67 85.1
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.4e-23 113.2 120 87.5
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 1.8e-23 112.8 67 83.6
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 1.8e-23 112.8 67 83.6
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.8e-23 112.8 120 85.8
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 3.0e-23 112.1 67 83.6
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 3.0e-23 112.1 67 85.1
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 4.0e-23 111.7 122 72.1
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 6.7e-23 110.9 67 82.1
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 8.8e-23 110.5 67 82.1
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 1.2e-22 110.2 67 82.1
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 1.5e-22 109.8 66 83.3
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 1.5e-22 109.8 67 82.1
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.5e-22 109.8 120 83.3
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 2.6e-22 109.0 67 82.1
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.6e-22 109.0 60 93.3
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 3.3e-22 108.6 122 86.1
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 4.4e-22 108.2 67 79.1
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 4.4e-22 108.2 67 80.6
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 4.4e-22 108.2 67 83.6
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 4.4e-22 108.2 67 82.1
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 5.7e-22 107.8 67 80.6
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 5.7e-22 107.8 67 83.6
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 1.3e-21 106.7 67 79.1
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.3e-21 106.7 122 78.7
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.3e-21 106.7 67 82.1
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.3e-21 106.7 67 77.6
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 1.3e-21 106.7 68 80.9
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.3e-21 106.7 67 82.1
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.7e-21 106.3 67 79.1
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 1.7e-21 106.3 67 79.1
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 1.7e-21 106.3 67 79.1
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 1.7e-21 106.3 67 79.1
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.7e-21 106.3 120 83.3
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 2.2e-21 105.9 67 79.1
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 2.2e-21 105.9 67 80.6
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 2.2e-21 105.9 68 80.9
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 2.8e-21 105.5 120 75.0
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 2.8e-21 105.5 120 83.3
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 3.7e-21 105.1 67 77.6
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 4.8e-21 104.8 120 83.3
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 4.8e-21 104.8 66 78.8
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 4.8e-21 104.8 66 78.8
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 4.8e-21 104.8 66 78.8
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 4.8e-21 104.8 67 77.6
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 4.8e-21 104.8 66 78.8
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 4.8e-21 104.8 67 77.6
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 4.8e-21 104.8 67 77.6
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 4.8e-21 104.8 67 77.6
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 4.8e-21 104.8 120 76.7
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 6.3e-21 104.4 120 82.5
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 6.3e-21 104.4 123 84.6
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 6.3e-21 104.4 68 80.9
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 6.3e-21 104.4 67 79.1
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 8.3e-21 104.0 67 77.6
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 8.3e-21 104.0 67 79.1
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.1e-20 103.6 67 77.6
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 1.1e-20 103.6 67 79.1
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.1e-20 103.6 67 79.1
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 1.4e-20 103.2 68 79.4
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.8e-20 102.8 67 77.6
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.8e-20 102.8 66 78.8
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 1.8e-20 102.8 67 79.1
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 2.4e-20 102.4 66 77.3
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 2.4e-20 102.4 66 77.3
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 2.4e-20 102.4 67 77.6
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 3.1e-20 102.1 120 76.7
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 4.1e-20 101.7 67 76.1
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 5.3e-20 101.3 67 79.1
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 5.3e-20 101.3 67 77.6
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 7.0e-20 100.9 65 76.9
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 7.0e-20 100.9 120 66.7
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 7.0e-20 100.9 120 70.8
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 9.1e-20 100.5 67 77.6
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 9.1e-20 100.5 67 76.1
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 1.2e-19 100.1 67 76.1
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 1.6e-19 99.8 67 76.1
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.6e-19 99.8 67 74.6
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.6e-19 99.8 67 76.1
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.6e-19 99.8 67 76.1
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 77.6
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 77.6
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 77.6
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 77.6
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 74.6
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.0e-19 99.4 120 72.5
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 77.6
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 3.5e-19 98.6 67 77.6
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 4.5e-19 98.2 67 74.6
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 4.5e-19 98.2 67 73.1
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 4.5e-19 98.2 67 77.6
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 4.5e-19 98.2 67 74.6
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 5.9e-19 97.8 67 71.6
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 5.9e-19 97.8 67 76.1
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 7.7e-19 97.4 67 76.1
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 7.7e-19 97.4 67 73.1
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 7.7e-19 97.4 67 74.6
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 1.0e-18 97.1 67 71.6
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 1.0e-18 97.1 67 74.6
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.7e-18 96.3 67 73.1
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.7e-18 96.3 61 77.0
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 1.7e-18 96.3 67 71.6
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 2.2e-18 95.9 67 70.1
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 3.8e-18 95.1 62 77.4
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 3.8e-18 95.1 67 73.1
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 3.8e-18 95.1 67 73.1
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 6.5e-18 94.4 67 71.6
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 6.5e-18 94.4 67 68.7
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 8.5e-18 94.0 67 71.6
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 8.5e-18 94.0 67 71.6
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 1.1e-17 93.6 67 70.1
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 5.5e-17 91.3 67 71.6
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 5.5e-17 91.3 120 79.2
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 7.2e-17 90.9 68 67.6
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 9.4e-17 90.5 67 68.7
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 9.4e-17 90.5 67 67.2
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.6e-16 89.7 67 67.2
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.1e-16 89.4 67 68.7
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 2.1e-16 89.4 67 65.7
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 2.1e-16 89.4 67 68.7
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 3.6e-16 88.6 67 67.2
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 3.6e-16 88.6 67 68.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 4.7e-16 88.2 63 74.6
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 8.0e-16 87.4 67 65.7
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 1.4e-15 86.7 67 61.2
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 5.2e-15 84.7 46 91.3
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 5.7e-14 81.3 67 65.7
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 8.3e-13 77.4 69 62.3
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 9.1e-12 73.9 69 58.0
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 2.7e-11 72.4 52 75.0
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 7.7e-11 70.9 121 68.6
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 1.0e-10 70.5 42 78.6
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 2.9e-10 68.9 51 72.5
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 2.9e-10 68.9 69 50.7
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 1.5e-09 66.6 49 71.4
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 1.9e-09 66.2 42 73.8
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 2.5e-09 65.9 46 67.4


User provided reference genes

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