Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022681 Camellia sinensis var. sinensis HOM05D005566 ORTHO05D007534 5.8e-223 777.3 412 100.0
Dinv38972 Davidia involucrata HOM05D005566 ORTHO05D007534 1.3e-134 483.8 325 76.6
CSS0044378 Camellia sinensis var. sinensis HOM05D005566 ORTHO05D007534 3.2e-133 479.2 338 73.4
Actinidia27393 Actinidia chinensis HOM05D005566 ORTHO05D007534 1.8e-128 463.4 407 63.6
GSVIVG01019806001 Vitis vinifera HOM05D005566 ORTHO05D007534 4.4e-122 442.2 324 68.8
Hma1.2p1_1943F.1_g308460 Hydrangea macrophylla HOM05D005566 ORTHO05D007534 3.0e-115 419.5 321 67.9
Actinidia14546 Actinidia chinensis HOM05D005566 ORTHO05D007534 1.5e-114 417.2 326 66.9
Peaxi162Scf00102g01550 Petunia axillaris HOM05D005566 ORTHO05D007534 4.4e-114 415.6 342 63.5
Sopen08g003840 Solanum pennellii HOM05D005566 ORTHO05D007534 9.8e-114 414.5 343 63.6
Solyc08g007950.3 Solanum lycopersicum HOM05D005566 ORTHO05D007534 3.7e-113 412.5 328 65.5
Haze_08893 Corylus avellana HOM05D005566 ORTHO05D007534 2.4e-112 409.8 363 59.8
TAR629G1018 Trochodendron aralioides HOM05D005566 ORTHO05D007534 4.1e-112 409.1 325 64.6
Cfa012142 Carpinus fangiana HOM05D005566 ORTHO05D007534 4.6e-111 405.6 363 59.2
vmacro11305 Vaccinium macrocarpon HOM05D005566 ORTHO05D007534 5.9e-111 405.2 321 65.1
QL12p018066 Quercus lobata HOM05D005566 ORTHO05D007534 1.7e-110 403.7 323 63.8
Cc08_g14350 Coffea canephora HOM05D005566 ORTHO05D007534 3.9e-110 402.5 327 64.2
Oeu049553.1 Olea europaea HOM05D005566 ORTHO05D007534 3.9e-110 402.5 324 66.0
Actinidia02022 Actinidia chinensis HOM05D005566 ORTHO05D007534 1.1e-109 401.0 336 62.8
Atru.chr9.204 Acer truncatum HOM05D005566 ORTHO05D007534 7.3e-109 398.3 321 64.5
CiPaw.12G095300 Carya illinoinensis HOM05D005566 ORTHO05D007534 1.2e-108 397.5 332 62.3
SalBow6G1897 Salvia bowleyana HOM05D005566 ORTHO05D007534 1.2e-108 397.5 300 67.7
Nitab4.5_0004032g0020 Nicotiana tabacum HOM05D005566 ORTHO05D007534 2.1e-108 396.7 344 61.9
Rhsim02G0223600 Rhododendron simsii HOM05D005566 ORTHO05D007534 6.2e-108 395.2 320 64.4
MSTRG.11999 Avicennia marina HOM05D005566 ORTHO05D007534 2.0e-106 390.2 303 68.0
Manes.02G024200 Manihot esculenta HOM05D005566 ORTHO05D007534 2.0e-106 390.2 341 60.4
SalBow5G3774 Salvia bowleyana HOM05D005566 ORTHO05D007534 9.8e-106 387.9 296 66.9
Nitab4.5_0001200g0190 Nicotiana tabacum HOM05D005566 ORTHO05D007534 3.7e-105 386.0 347 59.4
CAN.G792.89 Capsicum annuum HOM05D005566 ORTHO05D007534 1.1e-104 384.4 321 62.6
Sabra03G0087800 Salix brachista HOM05D005566 ORTHO05D007534 2.4e-104 383.3 324 62.0
Potri.003G124200 Populus trichocarpa HOM05D005566 ORTHO05D007534 4.1e-104 382.5 324 62.3
Nn6g33532 Nelumbo nucifera HOM05D005566 ORTHO05D007534 1.2e-103 380.9 337 59.3
Ciclev10024399m.g Citrus clementina HOM05D005566 ORTHO05D007534 3.0e-102 376.3 321 59.5
Sed0016580 Sechium edule HOM05D005566 ORTHO05D007534 1.1e-101 374.4 353 55.8
Lj2A187T86 Lonicera japonica HOM05D005566 ORTHO05D007534 3.3e-101 372.9 304 64.8
Prupe.5G095700 Prunus persica HOM05D005566 ORTHO05D007534 3.3e-101 372.9 327 60.6
Duzib205G0430 Durio zibethinus HOM05D005566 ORTHO05D007534 1.4e-99 367.5 305 63.6
TWI81G0928 Tripterygium wilfordii HOM05D005566 ORTHO05D007534 1.8e-99 367.1 321 59.2
ClCG01G002940 Citrullus lanatus HOM05D005566 ORTHO05D007534 2.3e-99 366.7 326 58.3
Migut.A00792 Erythranthe guttata HOM05D005566 ORTHO05D007534 2.3e-99 366.7 298 63.4
PGR031G0987 Punica granatum HOM05D005566 ORTHO05D007534 4.0e-99 365.9 308 63.3
Thecc.03G275300 Theobroma cacao HOM05D005566 ORTHO05D007534 6.8e-99 365.2 298 65.1
Duzib084G0536 Durio zibethinus HOM05D005566 ORTHO05D007534 3.4e-98 362.8 304 64.1
CANSAT21G2631 Cannabis sativa HOM05D005566 ORTHO05D007534 4.4e-98 362.5 321 59.5
Gohir.D12G229000 Gossypium hirsutum HOM05D005566 ORTHO05D007534 4.4e-98 362.5 306 62.7
Gohir.A12G226600 Gossypium hirsutum HOM05D005566 ORTHO05D007534 2.2e-97 360.1 306 62.7
CsaV3_5G003020 Cucumis sativus L. HOM05D005566 ORTHO05D007534 4.9e-97 359.0 326 56.1
ECA233G6007 Erigeron canadensis HOM05D005566 ORTHO05D007534 6.4e-97 358.6 325 58.5
Gorai.008G245200 Gossypium raimondii HOM05D005566 ORTHO05D007534 1.1e-96 357.8 306 61.8
Lsat_1_v5_gn_6_5820 Lactuca sativa HOM05D005566 ORTHO05D007534 1.9e-96 357.1 302 60.3
DCAR_008409 Daucus carota HOM05D005566 ORTHO05D007534 3.2e-96 356.3 306 62.1
RcHm_v2.0_Chr7g0198431 Rosa chinensis HOM05D005566 ORTHO05D007534 3.2e-96 356.3 321 58.6
COL.COLO4_34426 Corchorus olitorius HOM05D005566 ORTHO05D007534 5.4e-96 355.5 303 62.7
Eucgr.D01874 Eucalyptus grandis HOM05D005566 ORTHO05D007534 1.2e-95 354.4 307 60.6
Aqoxy5G04022 Aquilegia oxysepala HOM05D005566 ORTHO05D007534 1.6e-95 354.0 296 62.2
Lj4g0021136 Lotus japonicus HOM05D005566 ORTHO05D007534 6.0e-95 352.1 331 55.6
Lalb_Chr09g0333291 Lupinus albus HOM05D005566 ORTHO05D007534 1.3e-94 350.9 322 56.2
FvH4_5g01950 Fragaria vesca HOM05D005566 ORTHO05D007534 2.3e-94 350.1 305 60.0
FAN18G1004 Fragaria x ananassa HOM05D005566 ORTHO05D007534 2.3e-94 350.1 305 60.0
FAN04G1912 Fragaria x ananassa HOM05D005566 ORTHO05D007534 3.3e-93 346.3 321 56.7
Sc22g0000210 Simmondsia chinensis HOM05D005566 ORTHO05D007534 7.3e-93 345.1 297 58.2
MD06G1077900 Malus domestica HOM05D005566 ORTHO05D007534 1.6e-92 344.0 357 53.2
Ah.12g057290 Amaranthus hybridus HOM05D005566 ORTHO05D007534 2.1e-92 343.6 326 56.7
AL1G24430 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 2.8e-92 343.2 324 59.0
Psat7g035520 Pisum sativum HOM05D005566 ORTHO05D007534 3.6e-92 342.8 313 56.2
Glyma.08G012600 Glycine max HOM05D005566 ORTHO05D007534 4.7e-92 342.4 302 58.6
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 6.2e-92 342.0 322 56.8
THA.LOC104809401 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 6.2e-92 342.0 311 61.1
FAN08G2943 Fragaria x ananassa HOM05D005566 ORTHO05D007534 3.1e-91 339.7 324 56.2
HanXRQChr02g0048911 Helianthus annuus HOM05D005566 ORTHO05D007534 4.0e-91 339.3 326 54.9
PSO063G1293 Papaver somniferum HOM05D005566 ORTHO05D007534 4.0e-91 339.3 339 51.6
AT1G12800 Arabidopsis thaliana HOM05D005566 ORTHO05D007534 6.8e-91 338.6 327 57.8
CARHR013110 Cardamine hirsuta HOM05D005566 ORTHO05D007534 8.9e-91 338.2 322 59.0
PSO782G1537 Papaver somniferum HOM05D005566 ORTHO05D007534 1.2e-90 337.8 314 55.4
BcaC05g25112 Brassica carinata HOM05D005566 ORTHO05D007534 3.4e-90 336.3 325 57.5
Carub.0001s1252 Capsella rubella HOM05D005566 ORTHO05D007534 3.4e-90 336.3 326 58.0
Medtr8g097290 Medicago truncatula HOM05D005566 ORTHO05D007534 5.8e-90 335.5 313 56.5
BcaC05g25155 Brassica carinata HOM05D005566 ORTHO05D007534 7.6e-90 335.1 321 56.7
MELO3C005651.2 Cucumis melo HOM05D005566 ORTHO05D007534 7.6e-90 335.1 326 53.4
FAN13G1151 Fragaria x ananassa HOM05D005566 ORTHO05D007534 1.3e-89 334.3 324 54.6
THA.LOC104809657 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 2.9e-89 333.2 304 61.5
unitig_744.g24358 Utricularia gibba HOM05D005566 ORTHO05D007534 2.9e-89 333.2 336 54.8
VMungo0251G1600 Vigna mungo HOM05D005566 ORTHO05D007534 4.9e-89 332.4 346 52.3
BraA06t24082Z Brassica rapa HOM05D005566 ORTHO05D007534 8.4e-89 331.6 321 56.7
Thhalv10006889m.g Eutrema salsugineum HOM05D005566 ORTHO05D007534 8.4e-89 331.6 324 57.4
A06p08880 Brassica napus HOM05D005566 ORTHO05D007534 1.4e-88 330.9 321 57.0
ECA246G0114 Erigeron canadensis HOM05D005566 ORTHO05D007534 1.9e-88 330.5 313 56.2
Sp1g11360 Schrenkiella parvula HOM05D005566 ORTHO05D007534 2.1e-87 327.0 323 57.0
AUR62017248 Chenopodium quinoa HOM05D005566 ORTHO05D007534 7.8e-87 325.1 338 53.0
SGA_v2.0_scaffold253G45116 Striga asiatica HOM05D005566 ORTHO05D007534 7.8e-87 325.1 331 55.6
AUR62010607 Chenopodium quinoa HOM05D005566 ORTHO05D007534 1.0e-86 324.7 349 51.6
DCAR_004649 Daucus carota HOM05D005566 ORTHO05D007534 1.0e-86 324.7 321 54.2
C05p10500 Brassica napus HOM05D005566 ORTHO05D007534 3.9e-86 322.8 321 54.8
BolC5t29796H Brassica oleracea HOM05D005566 ORTHO05D007534 3.9e-86 322.8 321 54.8
Aa31LG1G1950 Aethionema arabicum HOM05D005566 ORTHO05D007534 8.6e-86 321.6 364 50.5
TPR.G12738 Trifolium pratense HOM05D005566 ORTHO05D007534 2.1e-84 317.0 311 55.0
Phvul.002G287600 Phaseolus vulgaris HOM05D005566 ORTHO05D007534 6.2e-84 315.5 313 52.7
Ca_17550_v3 Cicer arietinum L. HOM05D005566 ORTHO05D007534 4.0e-83 312.8 305 54.8
HanXRQChr06g0165791 Helianthus annuus HOM05D005566 ORTHO05D007534 2.6e-82 310.1 332 52.7
CDE05G3632 Ceratophyllum demersum HOM05D005566 ORTHO05D007534 8.4e-81 305.1 324 52.2
CDE08G0014 Ceratophyllum demersum HOM05D005566 ORTHO05D007534 1.2e-79 301.2 326 50.9
ATR0680G084 Amborella trichopoda HOM05D005566 ORTHO05D007534 4.6e-79 299.3 300 53.3
EL10Ac5g12770 Beta vulgaris HOM05D005566 ORTHO05D007534 1.1e-77 294.7 342 50.6
Lsat_1_v5_gn_3_7621 Lactuca sativa HOM05D005566 ORTHO05D007534 1.4e-75 287.7 304 53.3
arahy.Tifrunner.gnm1.ann1.8RU08H Arachis hypogaea HOM05D005566 ORTHO05D007534 3.5e-71 273.1 301 49.5
arahy.Tifrunner.gnm1.ann1.H32RIC Arachis hypogaea HOM05D005566 ORTHO05D007534 7.9e-71 271.9 301 49.2
Os02g0115600 Oryza sativa ssp. japonica HOM05D005566 ORTHO05D007534 5.1e-70 269.2 305 49.2
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.3e-65 254.6 247 58.7
Zm00001eb229900 Zea mays HOM05D005566 ORTHO05D007534 1.1e-64 251.5 295 46.4
Glyma.05G205700 Glycine max HOM05D005566 ORTHO05D007534 1.0e-62 245.0 241 55.2
Cpa.g.sc76.21 Carica papaya HOM05D005566 ORTHO05D007534 1.9e-61 240.7 247 52.2
Hund11490 Selenicereus undatus HOM05D005566 ORTHO05D007534 4.3e-61 239.6 304 46.7
HPP92_014800 Vanilla planifolia HOM05D005566 ORTHO05D007534 3.7e-60 236.5 244 50.8
MD14G1098600 Malus domestica HOM05D005566 ORTHO05D007534 1.3e-49 201.4 161 63.4
Mapoly0023s0130 Marchantia polymorpha HOM05D005566 ORTHO05D007534 1.8e-35 154.5 346 34.4
AagrBONN_evm.TU.Sc2ySwM_117.842 Anthoceros agrestis HOM05D005566 ORTHO05D007534 6.5e-33 146.0 248 34.7
arahy.Tifrunner.gnm1.ann1.SR6UK4 Arachis hypogaea HOM05D005566 ORTHO05D007534 6.5e-33 146.0 175 45.7
Pp3c15_23440 Physcomitrium patens HOM05D005566 ORTHO05D007534 1.9e-32 144.4 248 38.7
C08p15640 Brassica napus HOM05D005566 ORTHO05D007534 1.5e-29 134.8 161 49.1
BolC8t49191H Brassica oleracea HOM05D005566 ORTHO05D007534 1.5e-29 134.8 161 49.1
Pp3c9_24810 Physcomitrium patens HOM05D005566 ORTHO05D007534 5.7e-29 132.9 249 37.3
Cpa.g.sc76.19 Carica papaya HOM05D005566 ORTHO05D007534 2.8e-28 130.6 78 80.8
Glyma.06G293800 Glycine max HOM05D005566 ORTHO05D007534 2.4e-27 127.5 132 49.2
SEGI_27473 Sequoiadendron giganteum HOM05D005566 ORTHO05D007534 1.6e-23 114.8 178 38.2
ECA233G5767 Erigeron canadensis HOM05D005566 ORTHO05D007534 5.2e-22 109.8 129 52.7
BcaB03g13169 Brassica carinata HOM05D000776 ORTHO05D001624 2.7e-10 70.9 88 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1810 Anthoceros agrestis HOM05D006611 ORTHO05D008093 1.1e-08 65.5 244 25.8
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 3.6e-07 60.5 271 23.6
EL10Ac3g07417 Beta vulgaris HOM05D006611 ORTHO05D008093 4.7e-07 60.1 246 25.2
SEGI_37726 Sequoiadendron giganteum HOM05D005566 ORTHO05D007534 6.1e-07 59.7 52 46.2
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.0e-07 59.3 271 23.6
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 8.0e-07 59.3 271 24.0
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.0e-06 58.9 271 23.6
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.4e-06 58.5 165 31.5
Sed0010349 Sechium edule HOM05D006611 ORTHO05D008093 1.4e-06 58.5 285 23.5
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.8e-06 58.2 271 22.9
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.0e-06 57.4 273 23.8
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 4.0e-06 57.0 165 32.1
FAN22G2055 Fragaria x ananassa HOM05D006611 ORTHO05D008093 4.0e-06 57.0 119 34.5
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 5.2e-06 56.6 165 31.5
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 5.2e-06 56.6 285 23.9
FvH4_4g12580 Fragaria vesca HOM05D006611 ORTHO05D008093 5.2e-06 56.6 119 34.5
FAN07G1495 Fragaria x ananassa HOM05D006611 ORTHO05D008093 5.2e-06 56.6 119 34.5
FAN17G1417 Fragaria x ananassa HOM05D006611 ORTHO05D008093 5.2e-06 56.6 119 34.5
CBR_g66800 Chara braunii HOM05D006611 ORTHO05D008093 6.8e-06 56.2 313 22.4
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 6.8e-06 56.2 270 22.2
RcHm_v2.0_Chr4g0411421 Rosa chinensis HOM05D006611 ORTHO05D008093 6.8e-06 56.2 120 33.3
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 8.8e-06 55.8 270 24.4
Eucgr.H02624 Eucalyptus grandis HOM05D006611 ORTHO05D008093 8.8e-06 55.8 122 32.0


User provided reference genes

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