Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022587 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D009884 4.0e-40 167.5 79 100.0
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 1.7e-22 109.0 63 85.7
COL.COLO4_24941 Corchorus olitorius HOM05D000343 ORTHO05D009884 1.6e-20 102.4 52 88.5
Sopen01g047700 Solanum pennellii HOM05D000343 ORTHO05D009884 2.1e-20 102.1 58 79.3
PGSC0003DMG400012559 Solanum tuberosum HOM05D000343 ORTHO05D009884 2.1e-20 102.1 58 79.3
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 2.7e-20 101.7 51 92.2
Sabra03G0015100 Salix brachista HOM05D000343 ORTHO05D009884 2.7e-20 101.7 57 84.2
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 3.5e-20 101.3 62 80.6
Cpa.g.sc42.57 Carica papaya HOM05D000343 ORTHO05D009884 3.5e-20 101.3 53 86.8
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 3.5e-20 101.3 53 84.9
Peaxi162Scf00001g00124 Petunia axillaris HOM05D000343 ORTHO05D009884 4.6e-20 100.9 55 81.8
GSVIVG01038744001 Vitis vinifera HOM05D000343 ORTHO05D009884 6.0e-20 100.5 58 81.0
Ciclev10030175m.g Citrus clementina HOM05D000343 ORTHO05D009884 7.8e-20 100.1 63 77.8
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 7.8e-20 100.1 63 76.2
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 7.8e-20 100.1 52 88.5
RcHm_v2.0_Chr6g0271811 Rosa chinensis HOM05D000343 ORTHO05D009884 1.0e-19 99.8 54 83.3
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 1.3e-19 99.4 63 77.8
Gohir.D02G197000 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.3e-19 99.4 54 83.3
QL11p020880 Quercus lobata HOM05D000343 ORTHO05D009884 2.3e-19 98.6 66 69.7
Cc02_g21540 Coffea canephora HOM05D000343 ORTHO05D009884 3.0e-19 98.2 53 86.8
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 3.9e-19 97.8 58 79.3
Gorai.005G220100 Gossypium raimondii HOM05D000343 ORTHO05D009884 3.9e-19 97.8 52 86.5
Duzib248G1573 Durio zibethinus HOM05D000343 ORTHO05D009884 5.1e-19 97.4 52 84.6
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 5.1e-19 97.4 51 88.2
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 8.7e-19 96.7 50 88.0
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 8.7e-19 96.7 51 88.2
SalBow5G0636 Salvia bowleyana HOM05D000343 ORTHO05D009884 8.7e-19 96.7 60 78.3
SalBow5G2302 Salvia bowleyana HOM05D000343 ORTHO05D009884 8.7e-19 96.7 60 78.3
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 8.7e-19 96.7 51 88.2
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 1.1e-18 96.3 62 72.6
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 1.1e-18 96.3 62 75.8
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 1.1e-18 96.3 62 75.8
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 1.1e-18 96.3 63 73.0
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 1.5e-18 95.9 51 88.2
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 1.5e-18 95.9 63 73.0
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 1.9e-18 95.5 66 71.2
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.9e-18 95.5 51 86.3
MD10G1051800 Malus domestica HOM05D000343 ORTHO05D009884 1.9e-18 95.5 51 88.2
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 1.9e-18 95.5 51 86.3
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 2.5e-18 95.1 70 64.3
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 2.5e-18 95.1 51 82.4
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 2.5e-18 95.1 51 84.3
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 3.3e-18 94.7 54 81.5
MD05G1044800 Malus domestica HOM05D000343 ORTHO05D009884 3.3e-18 94.7 51 88.2
Glyma.05G117300 Glycine max HOM05D000343 ORTHO05D009884 4.3e-18 94.4 52 84.6
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 5.6e-18 94.0 62 74.2
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 5.6e-18 94.0 62 74.2
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 7.3e-18 93.6 51 82.4
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 7.3e-18 93.6 51 84.3
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 7.3e-18 93.6 63 73.0
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 9.6e-18 93.2 63 71.4
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 9.6e-18 93.2 63 73.0
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 1.3e-17 92.8 50 88.0
CiPaw.05G035500 Carya illinoinensis HOM05D000343 ORTHO05D009884 1.3e-17 92.8 51 86.3
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 1.3e-17 92.8 51 84.3
AL7G18020 Arabidopsis lyrata HOM05D000343 ORTHO05D009884 2.1e-17 92.0 54 77.8
Carub.0007s0694 Capsella rubella HOM05D000343 ORTHO05D009884 2.1e-17 92.0 54 77.8
DCAR_001785 Daucus carota HOM05D000343 ORTHO05D009884 2.1e-17 92.0 58 75.9
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 2.1e-17 92.0 63 73.0
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 2.1e-17 92.0 63 69.8
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 2.1e-17 92.0 51 78.4
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 2.8e-17 91.7 63 71.4
VMungo0251G0418 Vigna mungo HOM05D000343 ORTHO05D009884 2.8e-17 91.7 51 82.4
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 4.8e-17 90.9 66 65.2
Lalb_Chr04g0256521 Lupinus albus HOM05D000343 ORTHO05D009884 4.8e-17 90.9 51 82.4
Nn1g05348 Nelumbo nucifera HOM05D000343 ORTHO05D009884 4.8e-17 90.9 53 77.4
unitig_749.g14153 Utricularia gibba HOM05D000343 ORTHO05D009884 4.8e-17 90.9 60 71.7
MSTRG.16584 Avicennia marina HOM05D000343 ORTHO05D009884 6.2e-17 90.5 58 70.7
A08p17580 Brassica napus HOM05D000343 ORTHO05D009884 6.2e-17 90.5 54 75.9
CARHR241620 Cardamine hirsuta HOM05D000343 ORTHO05D009884 6.2e-17 90.5 54 75.9
Eucgr.L00195 Eucalyptus grandis HOM05D000343 ORTHO05D009884 6.2e-17 90.5 49 81.6
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 6.2e-17 90.5 63 69.8
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 8.1e-17 90.1 63 68.3
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 1.1e-16 89.7 51 80.4
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 1.1e-16 89.7 63 66.7
Oeu036419.1 Olea europaea HOM05D000343 ORTHO05D009884 1.1e-16 89.7 53 77.4
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 1.4e-16 89.4 51 80.4
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 1.4e-16 89.4 63 69.8
HanXRQChr13g0420711 Helianthus annuus HOM05D000343 ORTHO05D009884 1.4e-16 89.4 58 72.4
BraA08t33711Z Brassica rapa HOM05D000343 ORTHO05D009884 1.8e-16 89.0 53 75.5
Nn5g30120 Nelumbo nucifera HOM05D000343 ORTHO05D002777 1.8e-16 89.0 63 68.3
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 1.8e-16 89.0 52 82.7
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 2.4e-16 88.6 63 66.7
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 2.4e-16 88.6 63 66.7
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 3.1e-16 88.2 50 80.0
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 3.1e-16 88.2 63 66.7
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 3.1e-16 88.2 53 77.4
Oeu007963.1 Olea europaea HOM05D000343 ORTHO05D009884 3.1e-16 88.2 53 75.5
BcaB03g12795 Brassica carinata HOM05D000343 ORTHO05D009884 4.0e-16 87.8 54 74.1
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 5.3e-16 87.4 51 78.4
Eucgr.L00482 Eucalyptus grandis HOM05D000343 ORTHO05D009884 5.3e-16 87.4 49 77.6
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 5.3e-16 87.4 51 76.5
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 5.3e-16 87.4 63 68.3
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 6.9e-16 87.0 63 63.5
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 9.0e-16 86.7 63 65.1
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 9.0e-16 86.7 63 65.1
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 1.2e-15 86.3 54 74.1
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 1.5e-15 85.9 63 65.1
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 1.5e-15 85.9 50 76.0
Gohir.D04G154900 Gossypium hirsutum HOM05D000343 ORTHO05D009884 1.5e-15 85.9 58 69.0
TAR376G1172 Trochodendron aralioides HOM05D000343 ORTHO05D009884 2.0e-15 85.5 51 78.4
Eucgr.L00476 Eucalyptus grandis HOM05D000343 ORTHO05D009884 4.5e-15 84.3 60 60.0
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 5.8e-15 84.0 50 76.0
arahy.Tifrunner.gnm1.ann1.A40AQH Arachis hypogaea HOM05D000343 ORTHO05D002777 5.8e-15 84.0 54 72.2
C03p86570 Brassica napus HOM05D000343 ORTHO05D009884 5.8e-15 84.0 54 70.4
BolC3t20951H Brassica oleracea HOM05D000343 ORTHO05D009884 5.8e-15 84.0 54 70.4
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 5.8e-15 84.0 51 76.5
Sed0024706 Sechium edule HOM05D000343 ORTHO05D009884 7.6e-15 83.6 56 62.5
ClCG09G015420 Citrullus lanatus HOM05D000343 ORTHO05D009884 1.3e-14 82.8 58 62.1
Peaxi162Scf00152g01020 Petunia axillaris HOM05D000343 ORTHO05D009884 1.3e-14 82.8 51 78.4
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 1.3e-14 82.8 51 74.5
MELO3C018643.2 Cucumis melo HOM05D000343 ORTHO05D009884 1.7e-14 82.4 58 62.1
CsaV3_7G006490 Cucumis sativus L. HOM05D000343 ORTHO05D009884 1.7e-14 82.4 58 62.1
BcaC01g00987 Brassica carinata HOM05D000343 ORTHO05D009884 2.2e-14 82.0 53 69.8
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 2.9e-14 81.6 63 63.5
ECA236G2887 Erigeron canadensis HOM05D000343 ORTHO05D009884 2.9e-14 81.6 60 63.3
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 4.9e-14 80.9 63 60.3
Gohir.A04G113600 Gossypium hirsutum HOM05D000343 ORTHO05D009884 6.4e-14 80.5 51 72.5
Gorai.012G142100 Gossypium raimondii HOM05D000343 ORTHO05D009884 6.4e-14 80.5 51 72.5
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 1.4e-13 79.3 51 70.6
Lj6g0025417 Lotus japonicus HOM05D000343 ORTHO05D009884 1.4e-13 79.3 52 69.2
PSO210G0964 Papaver somniferum HOM05D000343 ORTHO05D009884 3.2e-13 78.2 61 62.3
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 4.2e-13 77.8 51 72.5
HanXRQChr11g0338131 Helianthus annuus HOM05D000343 ORTHO05D009884 5.4e-13 77.4 52 69.2
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 5.4e-13 77.4 63 58.7
MBI05_g19354_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D009884 7.1e-13 77.0 51 70.6
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 1.2e-12 76.3 63 60.3
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 1.2e-12 76.3 51 70.6
Hund06383 Selenicereus undatus HOM05D000343 ORTHO05D009884 1.6e-12 75.9 67 58.2
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 2.7e-12 75.1 50 72.0
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 2.7e-12 75.1 63 57.1
PSO447G0128 Papaver somniferum HOM05D000343 ORTHO05D009884 6.0e-12 73.9 53 64.2
Ca_00135_v3 Cicer arietinum L. HOM05D000343 ORTHO05D009884 7.9e-12 73.6 55 67.3
Lsat_1_v5_gn_7_80921 Lactuca sativa HOM05D000343 ORTHO05D009884 1.3e-11 72.8 51 66.7
Psat1g216600 Pisum sativum HOM05D000343 ORTHO05D009884 1.8e-11 72.4 57 61.4
arahy.Tifrunner.gnm1.ann1.HQ4SC1 Arachis hypogaea HOM05D000343 ORTHO05D009884 2.3e-11 72.0 52 65.4
CDE10G0761 Ceratophyllum demersum HOM05D000343 ORTHO05D009884 2.3e-11 72.0 58 58.6
Eucgr.L00219 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.0e-11 71.6 57 64.9
TPR.G25247 Trifolium pratense HOM05D000343 ORTHO05D009884 3.0e-11 71.6 59 62.7
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 3.0e-11 71.6 63 52.4
arahy.Tifrunner.gnm1.ann1.3SZ8AD Arachis hypogaea HOM05D000343 ORTHO05D009884 3.9e-11 71.2 56 60.7
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.1e-10 69.7 69 50.7
Eucgr.L00173 Eucalyptus grandis HOM05D000343 ORTHO05D009884 1.9e-10 68.9 57 63.2
Eucgr.G00759 Eucalyptus grandis HOM05D000343 ORTHO05D009884 9.6e-10 66.6 40 80.0
Eucgr.L00310 Eucalyptus grandis HOM05D000343 ORTHO05D009884 9.6e-10 66.6 40 80.0
SEGI_22608 Sequoiadendron giganteum HOM05D000343 ORTHO05D002777 1.6e-09 65.9 58 56.9
Zm00001eb392420 Zea mays HOM05D000343 ORTHO05D009884 1.6e-09 65.9 53 54.7
Glyma.15G053500 Glycine max HOM05D000343 ORTHO05D009884 2.1e-09 65.5 51 64.7
Eucgr.G00664 Eucalyptus grandis HOM05D000343 ORTHO05D009884 2.8e-09 65.1 40 77.5
Eucgr.G00674 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.7e-09 64.7 41 75.6
Eucgr.L00481 Eucalyptus grandis HOM05D000343 ORTHO05D009884 3.7e-09 64.7 40 77.5
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 4.8e-09 64.3 41 73.2
Glyma.08G179000 Glycine max HOM05D000343 ORTHO05D009884 6.2e-09 63.9 52 63.5
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.8e-08 62.4 54 57.4
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 4.0e-08 61.2 67 50.7
Medtr7g116990 Medicago truncatula HOM05D000343 ORTHO05D009884 4.0e-08 61.2 59 54.2
Os03g0388100 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D009884 5.3e-08 60.8 53 49.1
Zm00001eb327860 Zea mays HOM05D000343 ORTHO05D009884 1.2e-07 59.7 51 51.0
HPP92_019306 Vanilla planifolia HOM05D000343 ORTHO05D009884 2.0e-07 58.9 51 54.9
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 3.4e-07 58.2 65 49.2
CDE05G0554 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 5.8e-07 57.4 52 53.8
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 1.3e-06 56.2 54 53.7


User provided reference genes

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