Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022582 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D003548 8.0e-48 193.4 93 100.0
CSS0021784 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D003548 2.1e-16 89.0 67 67.2
Dinv29604 Davidia involucrata HOM05D001829 ORTHO05D003548 9.9e-14 80.1 48 83.3
Manes.07G025700 Manihot esculenta HOM05D001829 ORTHO05D003548 1.3e-13 79.7 64 67.2
TAR628G0621 Trochodendron aralioides HOM05D001829 ORTHO05D003548 1.7e-13 79.3 52 75.0
Dinv19424 Davidia involucrata HOM05D001829 ORTHO05D003548 2.2e-13 79.0 49 79.6
Manes.10G116400 Manihot esculenta HOM05D001829 ORTHO05D003548 6.4e-13 77.4 49 77.6
Actinidia26178 Actinidia chinensis HOM05D001829 ORTHO05D003548 8.4e-13 77.0 49 79.6
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 1.1e-12 76.6 49 79.6
Thecc.02G016800 Theobroma cacao HOM05D001829 ORTHO05D003548 1.4e-12 76.3 49 77.6
Actinidia38991 Actinidia chinensis HOM05D001829 ORTHO05D003548 1.9e-12 75.9 49 77.6
TAR381G0284 Trochodendron aralioides HOM05D001829 ORTHO05D003548 1.9e-12 75.9 49 73.5
Nn5g27503 Nelumbo nucifera HOM05D001829 ORTHO05D003548 2.4e-12 75.5 50 72.0
Actinidia00172 Actinidia chinensis HOM05D001829 ORTHO05D003548 5.4e-12 74.3 49 77.6
Haze_10033 Corylus avellana HOM05D001829 ORTHO05D003548 7.1e-12 73.9 62 64.5
Atru.chr6.543 Acer truncatum HOM05D001829 ORTHO05D003548 2.7e-11 72.0 49 69.4
Prupe.1G581100 Prunus persica HOM05D001829 ORTHO05D003548 3.5e-11 71.6 49 73.5
Gohir.A03G215600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 4.6e-11 71.2 49 73.5
GSVIVG01023232001 Vitis vinifera HOM05D001829 ORTHO05D003548 7.8e-11 70.5 64 59.4
Gohir.D12G043600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 1.0e-10 70.1 64 57.8
Gorai.005G265700 Gossypium raimondii HOM05D001829 ORTHO05D003548 1.0e-10 70.1 49 71.4
Gorai.008G045900 Gossypium raimondii HOM05D001829 ORTHO05D003548 1.0e-10 70.1 64 57.8
QL02p100929 Quercus lobata HOM05D001829 ORTHO05D003548 1.3e-10 69.7 49 71.4
CiPaw.05G003800 Carya illinoinensis HOM05D001829 ORTHO05D003548 1.7e-10 69.3 49 71.4
Gohir.A12G044600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 1.7e-10 69.3 64 57.8
Duzib248G0405 Durio zibethinus HOM05D001829 ORTHO05D003548 2.3e-10 68.9 64 56.2
Potri.004G225800 Populus trichocarpa HOM05D001829 ORTHO05D003548 3.9e-10 68.2 64 59.4
Duzib132G1055 Durio zibethinus HOM05D001829 ORTHO05D003548 5.1e-10 67.8 64 59.4
Gohir.D02G237100 Gossypium hirsutum HOM05D001829 ORTHO05D003548 5.1e-10 67.8 49 69.4
Hma1.2p1_0633F.1_g192740 Hydrangea macrophylla HOM05D001829 ORTHO05D003548 5.1e-10 67.8 49 67.3
vmacro19858 Vaccinium macrocarpon HOM05D001829 ORTHO05D003548 1.9e-09 65.9 65 55.4
Cpa.g.sc113.29 Carica papaya HOM05D001829 ORTHO05D003548 3.3e-09 65.1 64 50.0
Cc02_g23320 Coffea canephora HOM05D001829 ORTHO05D003548 3.3e-09 65.1 49 67.3
MD08G1243800 Malus domestica HOM05D001829 ORTHO05D003548 3.3e-09 65.1 49 65.3
Sabra01G0171500 Salix brachista HOM05D001829 ORTHO05D003548 7.3e-09 63.9 49 69.4
ATR1136G031 Amborella trichopoda HOM05D001829 ORTHO05D003548 9.6e-09 63.5 62 51.6
Ciclev10000901m.g Citrus clementina HOM05D001829 ORTHO05D003548 9.6e-09 63.5 49 67.3
MD15G1438000 Malus domestica HOM05D001829 ORTHO05D003548 1.3e-08 63.2 47 66.0
Sabra03G0002900 Salix brachista HOM05D001829 ORTHO05D007093 1.3e-08 63.2 49 67.3
COL.COLO4_17710 Corchorus olitorius HOM05D001829 ORTHO05D003548 2.8e-08 62.0 64 54.7
Hma1.2p1_0884F.1_g232370 Hydrangea macrophylla HOM05D001829 ORTHO05D003548 1.1e-07 60.1 50 64.0
Nitab4.5_0000667g0010 Nicotiana tabacum HOM05D001829 ORTHO05D003548 1.1e-07 60.1 52 59.6
CiPaw.06G175000 Carya illinoinensis HOM05D001829 ORTHO05D003548 1.8e-07 59.3 49 59.2
Potri.003G005700 Populus trichocarpa HOM05D001829 ORTHO05D003548 1.8e-07 59.3 49 63.3
CDE05G1946 Ceratophyllum demersum HOM05D001829 ORTHO05D003548 3.1e-07 58.5 49 61.2
PGR042G1417 Punica granatum HOM05D001829 ORTHO05D003548 5.3e-07 57.8 49 57.1
Nitab4.5_0022329g0010 Nicotiana tabacum HOM05D001829 ORTHO05D003548 1.2e-06 56.6 48 64.6
Oeu043625.3 Olea europaea HOM05D001829 ORTHO05D003548 3.4e-06 55.1 50 58.0
Oeu045913.1 Olea europaea HOM05D001829 ORTHO05D003548 4.4e-06 54.7 49 61.2
CANSAT54G1136 Cannabis sativa HOM05D001829 ORTHO05D003548 5.8e-06 54.3 58 53.4
DCAR_006663 Daucus carota HOM05D001829 ORTHO05D003548 9.9e-06 53.5 49 53.1


User provided reference genes

Program Settings