Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 0.0e+00 1735.7 938 100.0
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 0.0e+00 1581.6 918 94.6
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 0.0e+00 1190.3 919 71.9
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 0.0e+00 1129.0 887 72.8
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 0.0e+00 1110.5 923 70.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 0.0e+00 1107.4 928 68.3
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.3e-310 1069.7 850 71.3
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 1.6e-308 1062.8 917 65.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 3.3e-298 1028.5 919 64.4
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.8e-296 1022.7 908 65.3
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 2.0e-295 1019.2 911 65.2
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.7e-294 1015.0 934 64.9
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.0e-291 1005.4 849 69.4
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.6e-289 999.6 898 63.6
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 5.6e-282 974.5 923 62.4
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.6e-281 971.8 918 61.7
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.1e-280 970.3 908 62.2
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 8.9e-280 967.2 923 61.5
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 8.4e-278 960.7 913 61.8
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 2.3e-275 952.6 917 61.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.5e-274 949.1 875 63.2
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.2e-273 946.8 868 63.1
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.6e-273 946.4 913 60.8
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.6e-273 945.3 917 61.6
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 1.5e-271 939.9 918 61.2
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 5.8e-271 937.9 945 60.3
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.7e-270 936.4 918 61.5
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 4.9e-270 934.9 925 60.3
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.4e-269 932.6 916 59.0
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 9.3e-269 930.6 915 60.4
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 7.8e-268 927.5 937 59.6
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.3e-267 926.8 914 59.8
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.6e-265 919.8 922 59.3
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.6e-265 919.8 914 59.8
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.1e-265 917.5 795 68.1
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.4e-264 916.0 881 60.7
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.4e-263 912.1 917 59.2
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 9.9e-263 910.6 930 58.4
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.9e-262 909.1 914 59.2
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 6.4e-262 907.9 920 58.4
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.1e-261 907.1 835 62.5
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 3.2e-261 905.6 914 59.2
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.8e-259 899.8 914 57.9
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.3e-259 899.4 822 61.4
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.0e-259 899.0 926 58.1
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 3.9e-259 898.7 870 60.1
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 8.7e-259 897.5 916 58.8
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.1e-258 897.1 925 58.5
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.6e-257 893.3 933 57.6
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.1e-256 889.0 913 58.9
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 2.0e-255 886.3 915 58.0
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 3.8e-254 882.1 914 56.8
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 7.1e-253 877.9 950 54.4
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 7.9e-252 874.4 913 58.6
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 3.9e-251 872.1 921 57.3
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.9e-250 869.8 863 58.7
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 4.3e-250 868.6 917 58.3
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 8.1e-249 864.4 917 57.6
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 7.6e-247 857.8 917 57.4
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-246 857.1 911 56.9
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.2e-246 856.3 921 57.3
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 3.8e-246 855.5 865 58.3
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 2.7e-244 849.4 731 65.8
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.3e-243 847.0 870 57.6
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 2.5e-242 842.8 879 58.5
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.7e-241 839.0 913 56.8
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.1e-240 837.4 916 55.6
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 4.1e-240 835.5 867 59.3
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 6.9e-240 834.7 920 55.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 7.6e-239 831.2 910 54.9
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.7e-238 830.1 913 55.6
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.4e-237 827.0 914 54.8
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 7.2e-237 824.7 915 55.2
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.3e-235 820.5 877 57.4
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 3.0e-235 819.3 922 52.9
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 2.8e-233 812.8 882 56.2
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 3.7e-233 812.4 855 55.4
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.4e-232 810.4 821 58.1
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.1e-226 790.8 918 53.4
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 3.3e-226 789.3 921 52.6
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.7e-225 785.8 912 53.9
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.1e-224 784.3 912 53.4
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.1e-224 784.3 879 53.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-224 783.5 905 52.7
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 3.1e-224 782.7 865 54.1
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.9e-221 773.5 831 56.6
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 9.4e-221 771.2 853 54.0
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.1e-220 770.0 884 52.3
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.0e-219 767.7 864 53.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.8e-216 756.9 561 75.9
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.0e-214 751.1 884 52.3
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.7e-214 750.4 909 51.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.0e-214 748.8 863 52.3
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.5e-213 746.5 881 52.2
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 7.2e-213 745.0 858 52.7
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.3e-211 740.0 871 51.4
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.5e-210 737.3 882 52.9
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.8e-206 722.6 872 51.0
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.5e-205 720.7 737 57.7
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 2.5e-205 719.9 896 49.9
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 5.2e-203 712.2 871 51.8
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 5.9e-199 698.7 911 48.8
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 7.7e-199 698.4 873 49.8
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-198 697.6 894 49.0
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.9e-198 696.4 895 48.5
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.5e-197 693.3 855 49.4
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 5.5e-197 692.2 878 49.0
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.4e-194 682.9 614 62.9
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.3e-190 671.0 868 48.7
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 2.0e-186 657.1 903 46.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.9e-185 653.3 865 48.0
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.1e-179 633.3 841 49.0
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 4.4e-178 629.4 647 58.7
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.1e-171 608.2 881 46.8
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.3e-171 607.1 627 59.0
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 3.1e-171 606.7 852 47.2
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 6.6e-166 589.0 860 46.6
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.8e-163 580.9 1072 39.4
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.7e-143 513.8 408 72.3
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.7e-143 513.8 806 44.3
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-128 465.3 772 42.9
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.4e-128 464.9 471 58.0
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.3e-124 451.8 909 38.3
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.2e-119 435.3 1041 33.2
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 3.7e-116 423.7 442 58.6
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 3.3e-109 400.6 847 37.4
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.5e-105 386.0 957 35.0
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.7e-100 370.5 286 68.9
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 6.3e-100 369.8 248 77.0
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.6e-98 365.2 986 33.6
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.7e-97 361.7 346 58.4
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.4e-94 352.1 358 55.9
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 9.1e-91 339.3 872 33.5
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 9.1e-91 339.3 872 33.5
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 9.8e-85 319.3 233 70.8
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 7.7e-82 309.7 984 30.6
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.7e-76 292.0 473 43.3
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.2e-74 285.8 199 71.9
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 5.2e-62 243.8 808 30.3
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.4e-61 240.7 832 29.0
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 8.3e-60 236.5 314 49.0
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-58 231.9 422 42.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 7.8e-58 229.9 405 41.7
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 8.6e-57 226.5 405 41.5
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-56 225.7 391 43.2
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-55 221.9 401 43.6
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 6.8e-54 216.9 356 43.5
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 2.9e-52 211.5 353 41.1
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.3e-52 209.9 332 45.5
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 8.6e-49 199.9 151 67.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.8e-46 192.2 179 65.9
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.4e-46 191.8 174 60.9
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.6e-42 179.1 492 32.9
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 8.7e-41 173.3 703 28.3
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 4.3e-40 171.0 290 43.1
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.3e-40 171.0 270 42.2
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.2e-36 158.7 287 41.1
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-36 158.7 206 49.0
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 8.4e-36 156.8 131 60.3
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 7.1e-35 153.7 257 39.7
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 6.0e-34 150.6 169 53.8
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.1e-30 138.3 155 45.2
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.3e-30 137.5 139 57.6
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 9.3e-27 126.7 310 34.8
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.1e-26 125.6 309 34.3
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.0e-25 121.7 124 61.3
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.8e-23 115.2 202 38.1
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.8e-23 114.4 1185 23.3
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.8e-23 114.4 345 35.4
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 7.6e-21 107.1 304 32.9
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 8.4e-20 103.6 304 32.2
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 6.2e-15 87.4 183 36.1
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 2.0e-13 82.4 90 53.3
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 5.8e-13 80.9 91 48.4
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.5e-11 75.5 182 34.6
Actinidia24816 Actinidia chinensis HOM05D056392 ORTHO05D056303 1.3e-09 69.7 128 48.4
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 1.5e-08 66.2 126 41.3
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 3.7e-07 61.6 57 61.4
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.4e-06 59.7 73 49.3


User provided reference genes

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