Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.2e-144 515.0 251 100.0
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.9e-124 448.7 253 88.1
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.3e-121 439.9 253 87.0
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.3e-121 439.9 253 87.0
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 5.6e-120 434.5 252 84.1
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.1e-118 430.3 249 83.1
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 3.1e-118 428.7 253 83.8
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 4.4e-117 424.9 253 82.6
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 2.2e-116 422.5 248 82.3
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 2.9e-116 422.2 253 81.0
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 6.4e-116 421.0 251 81.3
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 1.1e-115 420.2 248 81.9
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 1.4e-115 419.9 248 81.5
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 2.4e-115 419.1 253 81.0
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 3.2e-115 418.7 249 81.5
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 1.6e-114 416.4 249 80.7
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 1.6e-114 416.4 251 81.7
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 2.7e-114 415.6 249 80.7
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 3.5e-114 415.2 248 81.5
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 3.5e-114 415.2 249 81.1
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 4.6e-114 414.8 248 81.5
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 1.3e-113 413.3 248 81.0
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 1.3e-113 413.3 253 80.2
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 1.7e-113 412.9 253 79.8
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 3.0e-113 412.1 248 81.0
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 3.9e-113 411.8 248 81.0
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 3.9e-113 411.8 251 79.3
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 3.9e-113 411.8 251 80.1
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 3.9e-113 411.8 253 79.1
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 8.6e-113 410.6 251 80.9
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 1.1e-112 410.2 253 78.7
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 1.9e-112 409.5 248 80.6
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 2.5e-112 409.1 251 80.5
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 4.3e-112 408.3 248 80.6
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 7.3e-112 407.5 251 80.5
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 1.6e-111 406.4 253 78.3
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 3.6e-111 405.2 253 77.5
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 3.6e-111 405.2 251 78.5
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 4.7e-111 404.8 247 80.6
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 4.7e-111 404.8 236 83.1
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 4.7e-111 404.8 251 78.9
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 4.7e-111 404.8 251 77.7
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 1.4e-110 403.3 251 77.7
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 2.3e-110 402.5 245 80.4
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 2.3e-110 402.5 253 77.9
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 2.3e-110 402.5 253 77.9
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 3.1e-110 402.1 248 78.2
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 4.0e-110 401.7 253 77.5
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 5.2e-110 401.4 251 78.1
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 5.2e-110 401.4 251 77.7
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 1.5e-109 399.8 248 78.6
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 5.8e-109 397.9 253 75.9
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 5.8e-109 397.9 248 77.8
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 1.3e-108 396.7 246 78.5
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 2.2e-108 396.0 240 80.0
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 2.9e-108 395.6 248 78.2
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 4.9e-108 394.8 251 75.3
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 6.4e-108 394.4 261 74.3
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 1.1e-107 393.7 251 75.3
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 1.1e-107 393.7 240 79.2
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 1.9e-107 392.9 250 75.6
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 1.9e-107 392.9 253 74.7
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 2.4e-107 392.5 249 75.9
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 4.6e-106 388.3 244 76.6
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 1.0e-105 387.1 248 76.6
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 1.7e-105 386.3 246 75.2
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 5.1e-105 384.8 236 78.4
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 1.5e-104 383.3 236 78.0
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 1.5e-104 383.3 239 78.7
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 3.3e-104 382.1 244 75.8
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 5.6e-104 381.3 247 75.7
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 7.3e-104 380.9 246 74.0
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 7.3e-104 380.9 235 78.3
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 1.2e-103 380.2 236 78.0
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 1.6e-103 379.8 248 75.0
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 2.8e-103 379.0 248 74.2
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 3.6e-103 378.6 248 74.2
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 8.1e-103 377.5 239 76.6
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 6.8e-102 374.4 235 79.6
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 6.8e-102 374.4 263 71.5
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 6.8e-102 374.4 245 75.1
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 8.9e-102 374.0 247 74.9
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 8.9e-102 374.0 241 75.9
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 1.2e-101 373.6 249 74.7
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 2.0e-101 372.9 242 74.8
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 4.4e-101 371.7 236 76.7
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 5.8e-101 371.3 242 74.4
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 7.6e-101 370.9 246 73.6
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 2.4e-99 365.9 235 75.7
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 7.1e-99 364.4 254 74.4
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 4.6e-98 361.7 247 71.3
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.7e-97 359.8 238 72.7
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 1.3e-95 353.6 241 71.8
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 3.6e-95 352.1 234 73.1
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.1e-95 350.9 235 71.9
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 1.8e-94 349.7 245 71.4
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.2e-92 342.8 201 83.6
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 1.9e-91 339.7 241 71.4
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 1.3e-87 327.0 267 61.0
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 2.8e-87 325.9 240 65.8
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 8.1e-87 324.3 253 68.0
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 4.0e-86 322.0 234 64.1
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 2.0e-85 319.7 268 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 2.6e-85 319.3 254 61.4
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.7e-84 316.6 252 67.1
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 2.2e-84 316.2 238 62.2
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 8.4e-84 314.3 251 62.9
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 1.4e-83 313.5 192 78.6
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 5.1e-81 305.1 267 55.8
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 2.6e-77 292.7 241 65.6
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 1.2e-74 283.9 188 73.4
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 3.3e-72 275.8 182 74.2
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 5.7e-72 275.0 161 82.6
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 2.8e-71 272.7 255 51.4
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 1.1e-70 270.8 159 80.5
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 1.1e-70 270.8 159 83.0
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 7.9e-66 254.6 232 52.6
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 1.1e-59 234.2 172 72.1
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 2.5e-59 233.0 232 51.3
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.6e-58 230.3 253 53.0
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.2e-52 209.9 188 58.0
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 1.1e-51 207.6 231 45.0
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 2.7e-50 203.0 118 78.8
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.8e-47 193.0 117 76.1
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.2e-44 183.3 96 89.6
CSS0016583 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.5e-43 180.6 120 76.7
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 7.5e-40 168.3 103 74.8
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 3.4e-32 142.9 88 81.8
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 2.0e-29 133.7 84 78.6
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 5.9e-29 132.1 81 74.1
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 2.6e-16 90.1 55 80.0
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 5.0e-12 75.9 54 72.2
ATR1096G015 Amborella trichopoda HOM05D005859 ORTHO05D007576 6.6e-12 75.5 54 59.3
HPP92_010586 Vanilla planifolia HOM05D005859 ORTHO05D007576 6.6e-12 75.5 49 69.4
A09p06400 Brassica napus HOM05D005859 ORTHO05D007576 7.3e-11 72.0 47 66.0
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 2.9e-07 60.1 210 29.0
MCO05G350 Micromonas commoda HOM05D005695 ORTHO05D007810 2.9e-07 60.1 232 24.1
Nn7g37385 Nelumbo nucifera HOM05D005695 ORTHO05D007810 1.4e-06 57.8 240 26.7
Eucgr.D01073 Eucalyptus grandis HOM05D005695 ORTHO05D007810 1.9e-06 57.4 172 30.8
Gorai.007G250100 Gossypium raimondii HOM05D005695 ORTHO05D007810 1.9e-06 57.4 181 30.4
PSO782G5257 Papaver somniferum HOM05D005695 ORTHO05D007810 2.4e-06 57.0 174 29.3
Zm00001eb004570 Zea mays HOM05D005695 ORTHO05D007810 2.4e-06 57.0 232 26.7
AagrBONN_evm.TU.Sc2ySwM_117.3790 Anthoceros agrestis HOM05D005695 ORTHO05D007810 3.2e-06 56.6 173 24.3
SMO351G0486 Selaginella moellendorffii HOM05D005695 ORTHO05D007810 4.1e-06 56.2 241 26.6
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 5.4e-06 55.8 234 23.9
HPP92_023786 Vanilla planifolia HOM05D005695 ORTHO05D007810 5.4e-06 55.8 176 30.1
ATR0568G060 Amborella trichopoda HOM05D005695 ORTHO05D007810 7.0e-06 55.5 192 29.7
Pp3c18_9830 Physcomitrium patens HOM05D005695 ORTHO05D007810 9.2e-06 55.1 188 24.5


User provided reference genes

Program Settings