Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.5e-107 392.1 197 100.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-103 379.4 197 97.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-102 376.7 197 97.0
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.9e-84 315.1 196 81.6
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 7.1e-78 294.3 191 75.4
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.1e-75 287.0 191 74.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 7.3e-75 284.3 190 72.6
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.2e-73 278.1 187 73.3
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 6.8e-73 277.7 194 71.1
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 8.4e-71 270.8 189 68.3
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 7.1e-70 267.7 185 69.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 9.3e-70 267.3 185 73.0
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.6e-69 265.0 190 68.4
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.0e-69 264.6 194 66.0
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.7e-68 263.1 186 68.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 3.0e-68 262.3 190 67.9
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.9e-68 261.9 188 66.0
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.5e-67 260.0 191 65.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.5e-67 260.0 192 64.1
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.3e-67 258.8 191 64.9
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.3e-67 258.5 191 64.9
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.6e-67 258.1 191 66.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 9.6e-67 257.3 190 67.4
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.8e-66 255.8 195 63.6
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.6e-66 255.4 185 67.6
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.1e-65 253.8 188 64.9
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.1e-65 253.8 195 61.5
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.8e-65 253.1 197 63.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.4e-65 252.7 193 64.2
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 9.0e-65 250.8 194 63.9
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-64 250.4 194 63.9
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.2e-64 250.4 189 63.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.5e-64 250.0 190 63.2
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.5e-64 250.0 187 63.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.0e-64 249.6 193 62.7
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.6e-64 249.2 192 63.5
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.6e-64 249.2 192 63.0
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 3.4e-64 248.8 193 62.7
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.3e-63 246.9 194 62.9
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.7e-63 246.5 188 64.4
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-63 246.5 194 62.9
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 2.2e-63 246.1 193 61.7
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.9e-63 245.7 193 60.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.9e-63 245.7 189 63.5
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 4.9e-63 245.0 193 60.1
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 6.4e-63 244.6 190 63.7
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.4e-63 244.6 191 62.8
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 8.4e-63 244.2 193 61.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.1e-62 243.8 193 62.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.1e-62 243.8 196 62.2
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.4e-62 243.4 194 61.9
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.9e-62 243.0 187 63.6
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.9e-62 243.0 191 62.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.2e-62 241.9 193 62.2
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.4e-62 241.5 191 61.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 5.4e-62 241.5 195 63.1
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.6e-61 240.0 192 59.4
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 2.1e-61 239.6 191 61.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.1e-61 239.6 194 57.7
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.5e-61 238.8 195 61.0
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 4.6e-61 238.4 194 62.9
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.3e-60 236.9 194 56.7
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.3e-60 236.9 190 58.9
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.3e-60 236.9 194 61.9
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-60 236.9 194 60.3
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.7e-60 236.5 192 60.4
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-60 236.5 195 60.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.3e-60 236.1 194 60.8
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 5.1e-60 235.0 239 50.6
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 6.6e-60 234.6 193 58.0
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 6.6e-60 234.6 193 59.6
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.5e-59 233.4 192 59.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.9e-59 233.0 193 59.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.5e-59 232.6 193 58.0
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.5e-59 232.6 194 60.3
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.3e-59 232.3 191 60.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 5.6e-59 231.5 192 57.8
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 5.6e-59 231.5 193 59.1
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.3e-59 231.1 187 62.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.6e-58 229.9 189 60.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-58 229.9 195 57.9
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.8e-58 229.2 193 54.9
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.8e-58 228.4 193 55.4
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.4e-57 226.1 194 58.2
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 2.4e-57 226.1 189 55.6
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.0e-57 225.3 193 59.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.0e-57 224.2 194 58.8
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.5e-56 223.4 194 56.2
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.5e-56 223.4 193 58.5
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-56 223.0 194 57.2
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-56 222.6 187 57.2
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-56 222.2 188 56.4
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 3.4e-56 222.2 193 56.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 4.5e-56 221.9 193 58.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 5.8e-56 221.5 187 57.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 5.8e-56 221.5 188 56.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 7.6e-56 221.1 190 56.8
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.3e-55 220.3 190 55.8
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.2e-55 219.5 187 56.7
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.4e-55 218.0 194 56.7
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-54 217.2 187 56.7
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.9e-54 216.5 189 56.1
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.2e-54 215.7 181 59.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 54.9
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-53 213.0 187 56.1
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 2.1e-53 213.0 170 59.4
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.5e-53 212.2 196 54.1
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.5e-53 212.2 188 55.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.5e-53 212.2 145 67.6
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 6.0e-53 211.5 192 53.1
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 6.0e-53 211.5 191 57.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.9e-53 211.1 179 58.1
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.0e-52 210.7 192 53.1
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.3e-52 209.5 193 54.9
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.0e-52 209.1 164 62.8
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.0e-52 209.1 193 55.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 5.1e-52 208.4 187 54.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.7e-52 208.0 188 54.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.9e-51 206.5 191 51.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.3e-51 205.3 197 56.3
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.3e-51 205.3 196 55.6
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 9.6e-51 204.1 188 52.7
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.3e-50 203.8 191 50.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.3e-50 203.8 175 58.9
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.1e-50 203.0 193 49.7
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.8e-50 202.6 192 51.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 194 49.5
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 193 47.2
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.4e-49 199.5 192 52.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 5.3e-49 198.4 193 46.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.2e-48 197.2 194 49.5
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.5e-48 196.8 192 52.1
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.0e-48 196.4 194 50.5
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 5.8e-48 194.9 174 57.5
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.2e-47 193.0 193 46.1
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.9e-47 192.6 193 46.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.5e-46 188.3 165 60.6
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 9.3e-46 187.6 140 61.4
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.1e-45 186.4 160 56.2
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 3.5e-45 185.7 193 49.7
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.3e-44 183.0 188 47.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 3.9e-44 182.2 188 49.5
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.1e-43 180.6 187 46.5
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.5e-43 180.3 191 47.1
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.1e-42 176.4 165 54.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.2e-42 174.9 124 66.9
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.2e-42 174.5 159 54.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.8e-41 173.3 165 53.9
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.0e-41 172.2 193 42.5
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.4e-40 169.1 193 45.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.5e-40 168.7 193 44.6
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.7e-39 166.8 180 50.0
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.2e-38 162.5 145 52.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 5.5e-38 161.8 194 47.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.2e-37 160.6 193 43.0
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.1e-35 154.1 126 57.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.9e-35 153.3 188 42.0
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.3e-35 152.1 158 52.5
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 7.4e-35 151.4 188 42.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-33 147.1 198 42.4
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.4e-33 147.1 193 42.0
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.0e-31 138.7 128 51.6
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.3e-28 129.8 109 57.8
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.0e-24 116.7 189 38.1
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.1e-22 110.9 194 40.7
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 7.2e-22 108.2 114 50.0
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.1e-21 106.7 192 34.9
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.4e-17 93.2 84 54.8
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.1e-17 91.3 102 50.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.2e-16 90.9 192 33.3
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 2.9e-15 86.3 94 43.6
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.9e-15 86.3 165 32.7
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 5.0e-15 85.5 182 33.0
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 5.5e-14 82.0 206 26.7
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.1e-13 78.6 78 47.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 6.7e-12 75.1 161 34.8
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.9e-06 57.0 95 37.9
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 4.2e-06 55.8 81 40.7
Pp3c23_8370 Physcomitrium patens HOM05D003838 ORTHO05D004444 5.5e-06 55.5 162 29.6


User provided reference genes

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