Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.5e-86 322.0 158 100.0
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.7e-56 221.5 108 100.0
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 1.4e-44 183.3 112 83.9
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 1.8e-44 183.0 109 85.3
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 5.4e-44 181.4 112 82.1
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.6e-43 179.9 112 82.1
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.0e-42 174.9 112 81.2
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 8.5e-42 174.1 112 77.7
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.9e-41 172.9 112 79.5
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 9.5e-41 170.6 112 77.7
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 2.7e-40 169.1 112 75.9
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 2.7e-40 169.1 112 75.9
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 2.7e-40 169.1 113 75.2
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 2.7e-40 169.1 112 75.9
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 4.7e-40 168.3 112 76.8
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 3.0e-39 165.6 112 76.8
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 3.0e-39 165.6 112 77.7
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 4.0e-39 165.2 111 76.6
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 5.2e-39 164.9 112 73.2
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 6.8e-39 164.5 112 76.8
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 1.5e-38 163.3 111 73.0
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 1.5e-38 163.3 112 75.9
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 2.6e-38 162.5 112 73.2
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 2.6e-38 162.5 113 70.8
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.6e-38 162.5 112 73.2
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.6e-38 162.5 111 74.8
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 3.4e-38 162.2 113 76.1
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 3.4e-38 162.2 111 72.1
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 4.4e-38 161.8 112 75.0
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 5.7e-38 161.4 112 71.4
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 5.7e-38 161.4 112 75.0
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 9.8e-38 160.6 112 71.4
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 1.7e-37 159.8 112 70.5
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 2.2e-37 159.5 108 72.2
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.8e-37 159.1 112 70.5
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 3.7e-37 158.7 112 75.9
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 3.7e-37 158.7 112 75.0
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 3.7e-37 158.7 112 73.2
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 8.3e-37 157.5 112 69.6
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 8.3e-37 157.5 112 74.1
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 8.3e-37 157.5 113 69.9
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.1e-36 157.1 112 74.1
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.1e-36 157.1 112 74.1
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.4e-36 156.8 112 71.4
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.4e-36 156.8 112 74.1
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.4e-36 156.8 112 74.1
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.4e-36 156.8 112 69.6
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 1.8e-36 156.4 112 71.4
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.8e-36 156.4 112 71.4
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.8e-36 156.4 112 71.4
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 2.4e-36 156.0 112 67.9
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 3.1e-36 155.6 112 70.5
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 4.1e-36 155.2 109 73.4
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 4.1e-36 155.2 114 71.9
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 5.4e-36 154.8 109 73.4
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 5.4e-36 154.8 112 70.5
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.6e-35 153.3 109 69.7
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.6e-35 153.3 112 69.6
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 2.7e-35 152.5 109 70.6
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 3.5e-35 152.1 109 70.6
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 3.5e-35 152.1 109 70.6
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 3.5e-35 152.1 114 69.3
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 4.5e-35 151.8 114 71.1
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 4.5e-35 151.8 114 71.1
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 4.5e-35 151.8 112 72.3
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 5.9e-35 151.4 109 70.6
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 1.0e-34 150.6 112 71.4
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.7e-34 149.8 111 68.5
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.7e-34 149.8 109 69.7
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 1.7e-34 149.8 109 69.7
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.7e-34 149.8 109 69.7
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 1.7e-34 149.8 112 71.4
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.3e-34 149.4 109 70.6
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 2.3e-34 149.4 114 69.3
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 5.0e-34 148.3 109 70.6
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 6.6e-34 147.9 112 67.0
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 8.6e-34 147.5 114 69.3
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 4.3e-33 145.2 109 69.7
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 4.3e-33 145.2 112 66.1
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 5.6e-33 144.8 112 69.6
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 9.5e-33 144.1 111 70.3
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 9.5e-33 144.1 112 67.9
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 1.2e-32 143.7 112 62.5
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 2.1e-32 142.9 112 66.1
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 3.6e-32 142.1 112 67.0
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.0e-31 140.6 109 67.9
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 1.4e-31 140.2 112 66.1
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 5.2e-31 138.3 103 69.9
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 8.9e-31 137.5 112 66.1
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.2e-30 137.1 112 63.4
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 2.0e-30 136.3 114 64.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 2.6e-30 136.0 122 60.7
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 4.4e-30 135.2 114 66.7
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 5.7e-30 134.8 112 60.7
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 2.2e-29 132.9 112 59.8
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 2.9e-29 132.5 113 62.8
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 1.4e-28 130.2 112 61.6
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.4e-28 130.2 112 61.6
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.4e-28 130.2 112 61.6
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.4e-28 130.2 112 61.6
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.6e-27 126.7 109 62.4
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 4.6e-27 125.2 112 62.5
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 2.1e-24 116.3 76 73.7
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 2.8e-24 115.9 112 58.9
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 8.0e-24 114.4 113 57.5
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.8e-23 113.2 108 58.3
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 3.1e-23 112.5 108 58.3
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 8.9e-23 110.9 113 53.1
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 4.9e-21 105.1 76 72.4
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 9.5e-17 90.9 84 59.5
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 7.5e-14 81.3 111 42.3
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 1.1e-12 77.4 110 46.4
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-09 65.5 54 66.7
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 2.0e-06 56.6 170 27.6


User provided reference genes

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