Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021898 Camellia sinensis var. sinensis HOM05D002163 ORTHO05D111780 2.9e-67 258.5 134 100.0
CSS0003902 Camellia sinensis var. sinensis HOM05D002163 ORTHO05D002386 8.9e-24 114.0 67 95.5
Actinidia26624 Actinidia chinensis HOM05D002163 ORTHO05D002386 4.4e-15 85.1 66 72.7
Dinv04378 Davidia involucrata HOM05D002163 ORTHO05D002386 9.9e-15 84.0 67 68.7
Oeu016930.1 Olea europaea HOM05D002163 ORTHO05D002386 1.9e-13 79.7 65 63.1
Rhsim02G0087600 Rhododendron simsii HOM05D002163 ORTHO05D002386 1.9e-13 79.7 66 71.2
vmacro15707 Vaccinium macrocarpon HOM05D002163 ORTHO05D002386 1.9e-13 79.7 65 72.3
GSVIVG01007067001 Vitis vinifera HOM05D002163 ORTHO05D002386 4.1e-13 78.6 64 64.1
Lj2C254G8 Lonicera japonica HOM05D002163 ORTHO05D002386 2.7e-12 75.9 65 64.6
Oeu017918.1 Olea europaea HOM05D002163 ORTHO05D002386 3.0e-11 72.4 69 55.1
MD05G1364500 Malus domestica HOM05D002163 ORTHO05D002386 1.9e-10 69.7 66 59.1
Prupe.4G000500 Prunus persica HOM05D002163 ORTHO05D002386 2.5e-10 69.3 66 57.6
Nn1g07647 Nelumbo nucifera HOM05D002163 ORTHO05D002386 3.3e-10 68.9 75 52.0
Cc09_g00070 Coffea canephora HOM05D002163 ORTHO05D002386 5.6e-10 68.2 65 60.0
TAR626G0216 Trochodendron aralioides HOM05D002163 ORTHO05D002386 5.6e-10 68.2 73 54.8
Cfa021531 Carpinus fangiana HOM05D002163 ORTHO05D002386 7.3e-10 67.8 66 57.6
Haze_07062 Corylus avellana HOM05D002163 ORTHO05D002386 7.3e-10 67.8 66 57.6
Manes.08G014800 Manihot esculenta HOM05D002163 ORTHO05D002386 1.6e-09 66.6 68 57.4
DCAR_005489 Daucus carota HOM05D002163 ORTHO05D002386 2.8e-09 65.9 78 47.4
Hma1.2p1_0394F.1_g143410 Hydrangea macrophylla HOM05D002163 ORTHO05D002386 2.8e-09 65.9 64 57.8
Lj4g0014611 Lotus japonicus HOM05D002163 ORTHO05D002386 3.6e-09 65.5 70 57.1
MD10G1342200 Malus domestica HOM05D002163 ORTHO05D002386 8.1e-09 64.3 66 57.6
Migut.M01480 Erythranthe guttata HOM05D002163 ORTHO05D002386 1.1e-08 63.9 65 53.8
Peaxi162Scf00563g00526 Petunia axillaris HOM05D002163 ORTHO05D002386 1.1e-08 63.9 66 57.6
QL05p066200 Quercus lobata HOM05D002163 ORTHO05D002386 1.1e-08 63.9 66 54.5
Nitab4.5_0001663g0220 Nicotiana tabacum HOM05D002163 ORTHO05D002386 1.4e-08 63.5 67 52.2
Potri.006G000700 Populus trichocarpa HOM05D002163 ORTHO05D002386 1.4e-08 63.5 66 60.6
Thecc.06G244600 Theobroma cacao HOM05D002163 ORTHO05D002386 2.4e-08 62.8 64 56.2
TAR624G1228 Trochodendron aralioides HOM05D002163 ORTHO05D002386 4.0e-08 62.0 45 73.3
CAN.G1456.14 Capsicum annuum HOM05D002163 ORTHO05D002386 5.2e-08 61.6 76 47.4
Potri.016G001000 Populus trichocarpa HOM05D002163 ORTHO05D002386 5.2e-08 61.6 66 57.6
Sabra06G0000900 Salix brachista HOM05D002163 ORTHO05D002386 5.2e-08 61.6 66 59.1
CiPaw.09G113100 Carya illinoinensis HOM05D002163 ORTHO05D002386 6.8e-08 61.2 58 60.3
Nitab4.5_0000147g0120 Nicotiana tabacum HOM05D002163 ORTHO05D002386 6.8e-08 61.2 67 50.7
PGSC0003DMG400027260 Solanum tuberosum HOM05D002163 ORTHO05D002386 6.8e-08 61.2 59 61.0
SalBow8G3928 Salvia bowleyana HOM05D002163 ORTHO05D002386 8.9e-08 60.8 51 60.8
Solyc04g015300.3 Solanum lycopersicum HOM05D002163 ORTHO05D002386 1.5e-07 60.1 59 61.0
Sopen04g007380 Solanum pennellii HOM05D002163 ORTHO05D002386 1.5e-07 60.1 59 61.0
MSTRG.7106 Avicennia marina HOM05D002163 ORTHO05D002386 5.8e-07 58.2 65 53.8
Glyma.17G003700 Glycine max HOM05D002163 ORTHO05D002386 5.8e-07 58.2 67 49.3
PGR042G0848 Punica granatum HOM05D002163 ORTHO05D002386 5.8e-07 58.2 68 51.5
Ciclev10015057m.g Citrus clementina HOM05D002163 ORTHO05D002386 7.6e-07 57.8 65 52.3
Duzib192G1072 Durio zibethinus HOM05D002163 ORTHO05D002386 7.6e-07 57.8 70 45.7
Phvul.003G089300 Phaseolus vulgaris HOM05D002163 ORTHO05D002386 7.6e-07 57.8 70 52.9
VMungo1215G0371 Vigna mungo HOM05D002163 ORTHO05D002386 7.6e-07 57.8 70 52.9
Cpa.g.sc27.184 Carica papaya HOM05D002163 ORTHO05D002386 1.3e-06 57.0 66 50.0
Sabra16G0007700 Salix brachista HOM05D002163 ORTHO05D002386 1.3e-06 57.0 65 52.3
SGA_v2.0_scaffold7G03652 Striga asiatica HOM05D002163 ORTHO05D002386 4.9e-06 55.1 65 47.7
Atru.chr1.2226 Acer truncatum HOM05D002163 ORTHO05D002386 6.4e-06 54.7 67 56.7
arahy.Tifrunner.gnm1.ann1.ZVK5KU Arachis hypogaea HOM05D002163 ORTHO05D002386 6.4e-06 54.7 64 51.6
COL.COLO4_31968 Corchorus olitorius HOM05D002163 ORTHO05D002386 6.4e-06 54.7 66 50.0
CiPaw.10G085000 Carya illinoinensis HOM05D002163 ORTHO05D002386 8.4e-06 54.3 68 51.5


User provided reference genes

Program Settings