Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.3e-150 534.3 257 100.0
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.1e-102 375.2 204 88.2
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 7.0e-102 374.4 204 88.2
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 8.0e-90 334.3 196 80.6
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 8.0e-90 334.3 196 79.6
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.8e-89 333.2 196 78.6
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 8.9e-89 330.9 204 76.5
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.3e-87 327.0 203 74.4
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 2.9e-87 325.9 204 73.5
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.2e-85 320.5 194 74.7
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.2e-85 320.5 196 73.5
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.6e-85 320.1 196 73.5
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 2.0e-85 319.7 196 74.0
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.0e-84 317.4 204 72.1
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.0e-84 317.4 208 70.2
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-84 317.0 179 84.9
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 1.3e-84 317.0 204 75.0
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 6.6e-84 314.7 204 71.6
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 6.6e-84 314.7 204 71.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.1e-83 313.9 196 74.0
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.1e-83 313.9 204 69.6
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.5e-83 313.5 196 75.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.5e-83 313.5 204 73.0
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.5e-83 312.8 196 75.0
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 4.3e-83 312.0 196 74.0
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 4.3e-83 312.0 196 70.4
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 5.6e-83 311.6 196 74.0
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 7.3e-83 311.2 208 69.2
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 9.5e-83 310.8 196 71.9
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 2.1e-82 309.7 220 65.0
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.1e-82 309.7 214 67.8
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.8e-82 309.3 195 71.3
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 2.8e-82 309.3 212 67.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 2.8e-82 309.3 204 69.1
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 2.8e-82 309.3 196 75.0
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.6e-82 308.9 196 73.5
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.7e-82 308.5 196 71.9
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 6.2e-82 308.1 204 71.6
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.1e-81 307.4 208 67.8
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.8e-81 306.6 196 71.4
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 2.3e-81 306.2 197 71.6
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 4.0e-81 305.4 220 64.1
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.2e-81 305.1 196 70.4
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.2e-81 305.1 196 70.4
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 5.2e-81 305.1 196 70.9
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 6.8e-81 304.7 196 69.9
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 8.9e-81 304.3 204 67.6
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 8.9e-81 304.3 203 69.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 8.9e-81 304.3 196 71.4
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 1.2e-80 303.9 196 68.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.2e-80 303.9 220 62.7
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.0e-80 303.1 196 69.9
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 2.6e-80 302.8 196 70.4
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 2.6e-80 302.8 189 73.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 2.6e-80 302.8 204 67.2
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 3.4e-80 302.4 204 69.1
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 3.4e-80 302.4 196 68.9
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 4.4e-80 302.0 223 65.9
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 4.4e-80 302.0 196 70.9
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 4.4e-80 302.0 220 65.9
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 5.8e-80 301.6 196 69.9
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 5.8e-80 301.6 196 69.9
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 5.8e-80 301.6 196 69.4
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 5.8e-80 301.6 204 66.2
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 7.5e-80 301.2 196 70.4
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 7.5e-80 301.2 204 67.6
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 9.8e-80 300.8 183 73.8
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.3e-79 300.4 196 68.4
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.3e-79 300.4 196 68.4
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.7e-79 300.1 196 68.9
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.2e-79 299.7 183 73.2
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-79 299.7 183 73.2
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-79 299.7 183 73.2
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 2.9e-79 299.3 204 65.2
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 2.9e-79 299.3 204 66.2
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 2.9e-79 299.3 212 66.0
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 3.7e-79 298.9 204 65.2
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.7e-79 298.9 165 84.8
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 3.7e-79 298.9 196 67.9
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 4.9e-79 298.5 195 70.8
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 6.4e-79 298.1 196 69.9
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.1e-78 297.4 205 65.4
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 1.4e-78 297.0 205 64.4
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 1.4e-78 297.0 197 69.0
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.4e-78 296.2 223 61.9
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 5.4e-78 295.0 196 66.8
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 5.4e-78 295.0 204 64.7
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 7.1e-78 294.7 196 65.3
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 7.1e-78 294.7 196 68.4
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 9.2e-78 294.3 204 64.2
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 9.2e-78 294.3 195 67.7
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 2.1e-77 293.1 204 63.7
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 4.6e-77 292.0 205 66.8
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 4.6e-77 292.0 196 65.3
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 6.0e-77 291.6 196 65.3
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 7.8e-77 291.2 201 64.2
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.0e-76 290.8 187 69.0
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.0e-76 289.3 231 58.9
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 3.9e-76 288.9 227 56.4
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 5.1e-76 288.5 219 60.3
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 5.1e-76 288.5 196 66.8
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.6e-76 288.1 150 90.7
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.3e-75 285.8 196 67.3
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 6.2e-74 281.6 205 63.4
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.1e-73 280.8 211 68.7
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 1.8e-73 280.0 194 64.4
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.8e-73 280.0 231 57.6
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.8e-73 280.0 205 66.3
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 6.8e-73 278.1 196 66.3
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-72 276.9 155 83.9
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.5e-72 276.9 220 58.2
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.5e-72 276.9 220 58.2
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 2.6e-72 276.2 205 62.9
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 3.4e-72 275.8 185 67.6
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.4e-70 270.4 179 66.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 1.4e-70 270.4 179 65.9
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 5.4e-70 268.5 201 60.7
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.7e-68 263.5 194 62.9
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 1.7e-68 263.5 292 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 6.2e-66 255.0 194 62.4
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 8.1e-66 254.6 177 61.0
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.8e-65 253.4 194 55.7
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.9e-62 243.4 197 56.3
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 2.7e-61 239.6 192 58.3
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.0e-60 237.7 155 68.4
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.3e-60 237.3 199 56.8
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 2.8e-50 203.0 197 52.8
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.3e-47 194.1 190 50.0
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 6.4e-47 191.8 122 74.6
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 5.3e-41 172.2 96 76.0
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 4.2e-38 162.5 218 39.9
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.6e-37 160.6 133 57.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 3.5e-37 159.5 189 41.3
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 3.7e-34 149.4 109 64.2
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 2.0e-24 117.1 67 76.1
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.9e-23 113.2 196 37.2
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.1e-19 101.3 250 29.2
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.9e-16 89.0 58 72.4
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 2.2e-15 87.0 64 60.9
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 6.5e-15 85.5 47 80.9
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 3.2e-14 83.2 100 47.0
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.0e-08 63.9 41 70.7


User provided reference genes

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