Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021770 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D033876 5.8e-89 330.9 168 100.0
CSS0049778 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D033876 8.5e-56 220.7 177 72.9
Rhsim10G0094500 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.0e-16 90.9 191 38.7
Dinv23050 Davidia involucrata HOM05D000032 ORTHO05D007443 1.3e-16 90.5 206 37.9
CSS0045534 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007443 1.1e-15 87.4 205 37.1
vmacro04601 Vaccinium macrocarpon HOM05D000032 ORTHO05D007443 7.3e-15 84.7 188 37.8
Actinidia36419 Actinidia chinensis HOM05D000032 ORTHO05D007443 1.6e-14 83.6 188 37.2
Atru.chr3.1066 Acer truncatum HOM05D000032 ORTHO05D007443 8.0e-14 81.3 206 34.5
Hund16419 Selenicereus undatus HOM05D000032 ORTHO05D007443 1.4e-13 80.5 208 33.7
COL.COLO4_11621 Corchorus olitorius HOM05D000032 ORTHO05D007443 1.8e-13 80.1 206 34.0
TAR381G1241 Trochodendron aralioides HOM05D000032 ORTHO05D007443 6.8e-13 78.2 206 33.0
Cfa006775 Carpinus fangiana HOM05D000032 ORTHO05D007443 1.2e-12 77.4 206 34.0
GSVIVG01007277001 Vitis vinifera HOM05D000032 ORTHO05D007443 1.2e-12 77.4 188 35.6
Haze_03984 Corylus avellana HOM05D000032 ORTHO05D007443 1.5e-12 77.0 191 35.1
Thecc.01G077000 Theobroma cacao HOM05D000032 ORTHO05D007443 2.6e-12 76.3 206 32.5
Lj4C166T2 Lonicera japonica HOM05D000032 ORTHO05D007443 3.4e-12 75.9 81 56.8
Ciclev10025201m.g Citrus clementina HOM05D000032 ORTHO05D007443 4.4e-12 75.5 191 33.5
MBI16_g35719_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007443 5.7e-12 75.1 207 33.8
Prupe.6G216200 Prunus persica HOM05D000032 ORTHO05D007443 5.7e-12 75.1 205 34.6
MSTRG.23651 Avicennia marina HOM05D000032 ORTHO05D007443 7.5e-12 74.7 205 33.7
CiPaw.08G149900 Carya illinoinensis HOM05D000032 ORTHO05D007443 9.8e-12 74.3 191 33.5
THA.LOC104807641 Tarenaya hassleriana HOM05D000032 ORTHO05D007443 1.3e-11 73.9 119 42.9
CiPaw.08G171600 Carya illinoinensis HOM05D000032 ORTHO05D007443 1.7e-11 73.6 84 51.2
PGR102G1941 Punica granatum HOM05D000032 ORTHO05D007443 1.7e-11 73.6 206 33.0
Potri.007G021800 Populus trichocarpa HOM05D000032 ORTHO05D007443 2.2e-11 73.2 191 34.6
Cc07_g07410 Coffea canephora HOM05D000032 ORTHO05D007443 3.7e-11 72.4 188 34.0
Eucgr.H02337 Eucalyptus grandis HOM05D000032 ORTHO05D007443 3.7e-11 72.4 205 33.2
Sed0005463 Sechium edule HOM05D000032 ORTHO05D007443 3.7e-11 72.4 118 42.4
HanXRQChr11g0323571 Helianthus annuus HOM05D000032 ORTHO05D007443 4.9e-11 72.0 191 33.5
Ca_10121_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007443 8.3e-11 71.2 191 33.0
QL06p038783 Quercus lobata HOM05D000032 ORTHO05D007443 8.3e-11 71.2 99 45.5
SGA_v2.0_scaffold121G33068 Striga asiatica HOM05D000032 ORTHO05D007443 8.3e-11 71.2 205 34.1
AUR62007544 Chenopodium quinoa HOM05D000032 ORTHO05D007443 1.1e-10 70.9 118 40.7
Manes.13G108500 Manihot esculenta HOM05D000032 ORTHO05D007443 1.1e-10 70.9 208 34.6
Oeu014318.2 Olea europaea HOM05D000032 ORTHO05D007443 2.4e-10 69.7 188 33.5
Sed0018251 Sechium edule HOM05D000032 ORTHO05D007443 2.4e-10 69.7 203 32.5
TWI74G1593 Tripterygium wilfordii HOM05D000032 ORTHO05D007443 2.4e-10 69.7 206 32.0
ClCG01G017830 Citrullus lanatus HOM05D000032 ORTHO05D007443 3.2e-10 69.3 203 32.5
HanXRQChr10g0318711 Helianthus annuus HOM05D000032 ORTHO05D007443 3.2e-10 69.3 181 34.3
PSO541G1009 Papaver somniferum HOM05D000032 ORTHO05D007443 3.2e-10 69.3 209 31.6
PSO675G5622 Papaver somniferum HOM05D000032 ORTHO05D007443 3.2e-10 69.3 209 31.6
PGSC0003DMG400021177 Solanum tuberosum HOM05D000032 ORTHO05D007443 4.1e-10 68.9 206 32.0
Psat6g149960 Pisum sativum HOM05D000032 ORTHO05D007443 5.4e-10 68.6 192 32.8
CAN.G79.11 Capsicum annuum HOM05D000032 ORTHO05D007443 7.0e-10 68.2 206 32.0
MELO3C007659.2 Cucumis melo HOM05D000032 ORTHO05D007443 7.0e-10 68.2 203 31.5
Lj5g0020960 Lotus japonicus HOM05D000032 ORTHO05D007443 7.0e-10 68.2 206 32.5
MD02G1190200 Malus domestica HOM05D000032 ORTHO05D007443 7.0e-10 68.2 205 31.2
Ah.02g125290 Amaranthus hybridus HOM05D000032 ORTHO05D007443 1.2e-09 67.4 206 31.1
Sopen02g019260 Solanum pennellii HOM05D000032 ORTHO05D007443 1.2e-09 67.4 206 32.5
Medtr1g083130 Medicago truncatula HOM05D000032 ORTHO05D007443 1.6e-09 67.0 104 44.2
Solyc02g070100.3 Solanum lycopersicum HOM05D000032 ORTHO05D007443 1.6e-09 67.0 206 32.5
CsaV3_6G044370 Cucumis sativus L. HOM05D000032 ORTHO05D007443 2.0e-09 66.6 203 31.0
Peaxi162Scf00423g00221 Petunia axillaris HOM05D000032 ORTHO05D007443 2.7e-09 66.2 81 49.4
CANSAT64G0745 Cannabis sativa HOM05D000032 ORTHO05D007443 3.5e-09 65.9 206 32.0
Lalb_Chr09g0323751 Lupinus albus HOM05D000032 ORTHO05D007443 3.5e-09 65.9 191 32.5
Rhsim02G0087100 Rhododendron simsii HOM05D000032 ORTHO05D007443 3.5e-09 65.9 74 54.1
Aqoxy3G01532 Aquilegia oxysepala HOM05D000032 ORTHO05D007443 4.6e-09 65.5 98 43.9
Glyma.10G152900 Glycine max HOM05D000032 ORTHO05D007443 4.6e-09 65.5 191 32.5
Nn5g30290 Nelumbo nucifera HOM05D000032 ORTHO05D007443 4.6e-09 65.5 192 30.7
AUR62004035 Chenopodium quinoa HOM05D000032 ORTHO05D007443 7.8e-09 64.7 100 43.0
Gohir.A11G211800 Gossypium hirsutum HOM05D000032 ORTHO05D007443 7.8e-09 64.7 205 30.7
Gorai.007G226800 Gossypium raimondii HOM05D000032 ORTHO05D007443 7.8e-09 64.7 205 30.7
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 1.0e-08 64.3 200 30.0
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 1.0e-08 64.3 200 30.0
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 1.0e-08 64.3 200 30.0
CDE01G0309 Ceratophyllum demersum HOM05D000032 ORTHO05D007443 1.3e-08 63.9 207 31.4
Sp7g32660 Schrenkiella parvula HOM05D000032 ORTHO05D007443 1.3e-08 63.9 204 29.9
VMungo0720G2333 Vigna mungo HOM05D000032 ORTHO05D007443 1.3e-08 63.9 191 31.4
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 2.3e-08 63.2 200 29.5
Migut.H00321 Erythranthe guttata HOM05D000032 ORTHO05D007443 2.3e-08 63.2 207 30.9
Gohir.D11G211100 Gossypium hirsutum HOM05D000032 ORTHO05D007443 2.3e-08 63.2 205 30.2
BcaB03g11802 Brassica carinata HOM05D000032 ORTHO05D007443 3.0e-08 62.8 177 31.6
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 3.0e-08 62.8 200 29.5
Glyma.20G235400 Glycine max HOM05D000032 ORTHO05D007443 3.0e-08 62.8 188 32.4
Lsat_1_v5_gn_4_158421 Lactuca sativa HOM05D000032 ORTHO05D007443 3.0e-08 62.8 192 30.7
Nitab4.5_0001225g0240 Nicotiana tabacum HOM05D000032 ORTHO05D007443 3.0e-08 62.8 195 31.8
Nitab4.5_0010329g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007443 3.0e-08 62.8 195 31.8
arahy.Tifrunner.gnm1.ann1.11GZ1T Arachis hypogaea HOM05D000032 ORTHO05D007443 3.9e-08 62.4 189 32.3
HPP92_011749 Vanilla planifolia HOM05D000032 ORTHO05D007443 5.0e-08 62.0 202 30.2
arahy.Tifrunner.gnm1.ann1.MR2VJ3 Arachis hypogaea HOM05D000032 ORTHO05D007443 6.6e-08 61.6 189 31.7
Sabra07G0018900 Salix brachista HOM05D000032 ORTHO05D007443 6.6e-08 61.6 191 33.0
Thhalv10024759m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 8.6e-08 61.2 200 30.5
Aa31LG2G15620 Aethionema arabicum HOM05D000032 ORTHO05D007443 1.1e-07 60.8 206 30.1
Duzib147G1507 Durio zibethinus HOM05D000032 ORTHO05D007443 1.5e-07 60.5 148 32.4
arahy.Tifrunner.gnm1.ann1.318AHN Arachis hypogaea HOM05D000032 ORTHO05D007443 1.9e-07 60.1 102 42.2
Sc16g0002800 Simmondsia chinensis HOM05D000032 ORTHO05D007443 1.9e-07 60.1 206 31.1
TPR.G6058 Trifolium pratense HOM05D000032 ORTHO05D007443 4.3e-07 58.9 191 31.4
Thhalv10013368m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 5.6e-07 58.5 93 41.9
RcHm_v2.0_Chr7g0222281 Rosa chinensis HOM05D000032 ORTHO05D007443 9.5e-07 57.8 192 28.6
Phvul.007G179201 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.2e-06 57.4 191 31.4
Phvul.007G193500 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.2e-06 57.4 191 31.4
Rhsim02G0062600 Rhododendron simsii HOM05D000032 ORTHO05D033876 2.8e-06 56.2 42 66.7
AL7G16320 Arabidopsis lyrata HOM05D000032 ORTHO05D007443 4.7e-06 55.5 201 29.4
CSS0041359 Camellia sinensis var. sinensis HOM05D001381 ORTHO05D001230 4.7e-06 55.5 40 67.5
SMO116G0033 Selaginella moellendorffii HOM05D000032 ORTHO05D007443 6.2e-06 55.1 103 37.9


User provided reference genes

Program Settings