Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 7.9e-197 690.3 353 100.0
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.4e-193 679.5 356 98.3
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 1.5e-134 483.4 342 73.4
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 2.5e-134 482.6 340 74.7
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 8.1e-133 477.6 310 78.4
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 1.5e-131 473.4 348 72.4
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 4.4e-131 471.9 304 80.3
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 9.9e-131 470.7 304 80.3
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 2.9e-130 469.2 348 72.1
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 8.4e-130 467.6 298 80.2
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 2.1e-128 463.0 298 78.9
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 2.1e-128 463.0 354 68.6
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 2.7e-128 462.6 344 71.2
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 3.5e-128 462.2 296 79.1
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.3e-127 460.3 313 76.0
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.7e-127 459.9 352 69.6
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 2.3e-127 459.5 352 69.6
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 2.3e-127 459.5 305 77.4
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 8.6e-127 457.6 352 70.7
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.1e-126 457.2 333 71.5
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.9e-126 456.4 294 78.9
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.9e-126 456.4 342 70.8
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.9e-126 456.4 352 69.6
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 3.3e-126 455.7 326 75.5
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 4.3e-126 455.3 304 76.6
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 5.6e-126 454.9 301 76.1
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 5.6e-126 454.9 351 69.8
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.2e-125 453.8 340 67.9
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 2.1e-125 453.0 352 69.6
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.1e-125 453.0 309 75.4
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 2.1e-125 453.0 314 73.9
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.1e-125 453.0 296 78.0
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.8e-125 452.6 347 70.3
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 2.8e-125 452.6 352 69.0
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 4.7e-125 451.8 353 66.9
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.4e-124 450.3 312 74.7
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 4.0e-124 448.7 347 68.0
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 8.9e-124 447.6 352 66.8
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 8.9e-124 447.6 351 68.1
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 8.9e-124 447.6 352 67.6
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 4.4e-123 445.3 308 73.7
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 5.8e-123 444.9 307 74.9
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.3e-122 443.7 310 73.2
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.3e-122 443.7 295 77.3
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 2.2e-122 443.0 352 67.3
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 8.4e-122 441.0 349 67.9
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 1.1e-121 440.7 303 74.6
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.1e-121 440.7 351 68.1
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.4e-121 440.3 304 74.0
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 1.4e-121 440.3 294 74.8
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 3.2e-121 439.1 303 74.3
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 4.2e-121 438.7 303 73.9
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 4.2e-121 438.7 303 73.9
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 5.4e-121 438.3 303 73.9
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 5.4e-121 438.3 303 73.6
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 7.1e-121 438.0 334 69.5
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 9.3e-121 437.6 338 68.3
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.6e-120 436.8 324 71.0
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 2.1e-120 436.4 313 71.9
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 2.1e-120 436.4 311 70.7
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 3.5e-120 435.6 313 71.9
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 6.0e-120 434.9 343 65.6
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.0e-119 434.1 303 72.6
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.3e-119 433.0 303 72.9
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.3e-119 433.0 303 72.9
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 3.0e-119 432.6 340 67.6
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 8.7e-119 431.0 309 70.9
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.9e-118 429.9 336 67.3
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.3e-117 427.2 337 67.7
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 4.8e-117 425.2 339 66.4
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 6.2e-117 424.9 270 80.7
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 6.2e-117 424.9 355 63.7
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 5.8e-115 418.3 344 65.4
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 7.6e-115 417.9 290 73.1
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 3.8e-114 415.6 303 68.3
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 4.9e-114 415.2 261 80.5
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 5.4e-113 411.8 288 71.2
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 2.1e-112 409.8 330 65.5
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.5e-112 409.1 258 81.0
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.9e-110 403.3 319 67.1
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 1.6e-109 400.2 291 69.8
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 5.3e-108 395.2 572 46.0
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 2.6e-107 392.9 293 71.7
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.6e-107 392.9 311 64.0
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 1.0e-103 380.9 495 47.7
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 5.1e-103 378.6 307 67.1
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 3.3e-102 375.9 263 69.2
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 8.2e-101 371.3 265 74.7
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 6.9e-100 368.2 361 58.7
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 4.5e-99 365.5 516 45.0
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 9.6e-94 347.8 349 57.3
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.6e-93 347.1 287 62.7
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.7e-93 345.9 226 74.8
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.1e-92 344.4 226 74.3
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.9e-89 333.6 253 69.2
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.6e-88 330.5 272 59.9
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 6.7e-87 325.1 282 57.4
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 4.3e-86 322.4 230 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 4.1e-84 315.8 285 56.1
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.2e-83 314.3 184 85.9
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 2.0e-83 313.5 294 55.1
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.2e-80 304.3 371 51.2
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.7e-59 233.4 203 63.5
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 2.9e-58 229.9 247 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 3.8e-58 229.6 191 59.2
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 3.8e-58 229.6 170 65.3
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.1e-57 228.0 150 76.0
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 5.5e-57 225.7 357 39.8
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 6.5e-50 202.2 228 55.3
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 1.2e-48 198.0 193 50.8
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.2e-48 198.0 192 56.8
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 6.8e-47 192.2 328 36.9
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 1.2e-38 164.9 216 45.4
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 4.7e-32 142.9 169 46.2
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.5e-30 137.9 91 78.0
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 7.0e-28 129.0 98 65.3
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 2.3e-26 124.0 77 77.9
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.0e-26 122.9 75 78.7
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-23 114.4 58 94.8
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-23 114.4 58 94.8
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-23 114.4 58 94.8
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-23 114.4 58 94.8
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-23 114.4 58 94.8
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.8e-23 112.5 58 93.1
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-22 111.7 58 93.1
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.4e-22 110.2 58 93.1
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 1.7e-21 107.8 84 66.7
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 5.4e-20 102.8 138 49.3
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 3.9e-18 96.7 77 57.1
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.3e-17 93.6 64 75.0
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 6.8e-15 85.9 55 70.9
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 2.0e-14 84.3 108 44.4
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 4.9e-13 79.7 155 32.9
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 1.4e-07 61.6 38 76.3
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 7.6e-06 55.8 45 57.8


User provided reference genes

Program Settings