Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.5e-65 250.0 109 100.0
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.3e-52 209.5 91 98.9
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.3e-52 209.5 91 98.9
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.7e-52 208.0 91 97.8
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 3.1e-51 204.9 91 95.6
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.1e-51 204.9 91 94.5
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 3.1e-51 204.9 91 93.4
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 93.4
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 93.4
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 93.4
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 93.4
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 93.4
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 93.4
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 93.4
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 1.2e-50 203.0 91 95.6
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.0e-50 202.2 91 93.4
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 2.6e-50 201.8 91 94.5
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 3.4e-50 201.4 91 94.5
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.5e-50 201.1 91 92.3
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 4.5e-50 201.1 91 92.3
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 4.5e-50 201.1 91 92.3
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.7e-50 200.3 91 94.5
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 1.0e-49 199.9 91 92.3
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 1.3e-49 199.5 91 91.2
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.7e-49 199.1 91 90.1
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 1.7e-49 199.1 91 90.1
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.2e-49 198.7 91 90.1
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.2e-49 198.7 91 90.1
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.9e-49 198.4 91 91.2
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 2.9e-49 198.4 91 93.4
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 3.8e-49 198.0 91 92.3
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 3.8e-49 198.0 91 91.2
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 3.8e-49 198.0 91 90.1
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 5.0e-49 197.6 91 89.0
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 8.5e-49 196.8 90 91.1
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.1e-48 196.4 91 90.1
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.1e-48 196.4 91 90.1
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 1.4e-48 196.1 91 89.0
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.9e-48 195.7 91 90.1
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 3.2e-48 194.9 91 89.0
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 3.2e-48 194.9 91 91.2
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 3.2e-48 194.9 91 89.0
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.2e-47 193.0 91 89.0
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.2e-47 193.0 91 87.9
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.6e-47 192.6 91 89.0
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.6e-47 192.6 91 89.0
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 1.6e-47 192.6 91 87.9
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.1e-47 192.2 91 86.8
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 2.1e-47 192.2 91 87.9
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 4.7e-47 191.0 91 84.6
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 6.1e-47 190.7 91 87.9
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 6.1e-47 190.7 91 87.9
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.1e-47 190.7 91 86.8
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 6.1e-47 190.7 91 90.1
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 8.0e-47 190.3 91 84.6
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 8.0e-47 190.3 91 87.9
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 1.0e-46 189.9 91 87.9
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.0e-46 189.9 91 86.8
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.0e-46 189.9 90 87.8
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.4e-46 189.5 91 83.5
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 1.4e-46 189.5 91 86.8
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.8e-46 189.1 91 86.8
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.8e-46 189.1 91 86.8
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 1.8e-46 189.1 91 86.8
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 3.0e-46 188.3 91 86.8
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 3.0e-46 188.3 91 85.7
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 3.9e-46 188.0 91 83.5
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 5.2e-46 187.6 91 85.7
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 8.8e-46 186.8 91 84.6
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 1.1e-45 186.4 114 71.9
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.1e-45 186.4 114 71.9
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.1e-45 186.4 90 86.7
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.5e-45 186.0 91 85.7
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.5e-45 186.0 91 85.7
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.5e-45 186.0 91 83.5
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 1.5e-45 186.0 90 86.7
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.0e-45 185.7 91 83.5
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.0e-45 185.7 91 83.5
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 2.0e-45 185.7 91 83.5
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.0e-45 185.7 91 84.6
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.0e-45 185.7 91 84.6
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.0e-45 185.7 91 85.7
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.3e-45 184.9 91 84.6
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 5.7e-45 184.1 91 84.6
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 9.7e-45 183.3 91 83.5
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 9.7e-45 183.3 91 84.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.7e-44 182.6 91 81.3
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 2.8e-44 181.8 87 87.4
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 3.7e-44 181.4 91 81.3
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 6.3e-44 180.6 91 84.6
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 6.3e-44 180.6 91 81.3
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 8.2e-44 180.3 91 81.3
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 8.2e-44 180.3 91 83.5
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.8e-43 179.1 91 82.4
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.8e-43 179.1 91 82.4
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.4e-43 178.7 91 80.2
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 2.4e-43 178.7 91 82.4
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 4.1e-43 177.9 91 80.2
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 4.1e-43 177.9 91 79.1
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 4.1e-43 177.9 90 81.1
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 4.1e-43 177.9 91 82.4
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 4.1e-43 177.9 91 82.4
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 5.3e-43 177.6 91 80.2
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 7.0e-43 177.2 91 79.1
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.2e-42 176.4 91 84.6
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 1.6e-42 176.0 91 78.0
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 2.0e-42 175.6 91 78.0
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.0e-42 175.6 91 78.0
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 2.6e-42 175.3 105 73.3
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 3.5e-42 174.9 91 76.9
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 3.5e-42 174.9 91 76.9
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 3.5e-42 174.9 91 76.9
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 3.5e-42 174.9 91 81.3
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.0e-41 173.3 90 81.1
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 5.0e-41 171.0 91 76.9
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 3.2e-40 168.3 91 78.0
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 8.8e-38 160.2 91 74.7
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.5e-37 159.5 88 73.9
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 3.7e-36 154.8 90 72.2
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 4.8e-36 154.5 90 70.0
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 2.4e-35 152.1 91 69.2
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 4.2e-32 141.4 91 64.8
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.8e-30 136.0 62 88.7
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.8e-30 136.0 62 88.7
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 1.6e-23 112.8 61 73.8
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 4.4e-21 104.8 62 64.5
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 2.3e-14 82.4 106 37.7
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.9e-11 72.8 35 85.7
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 3.2e-11 72.0 55 61.8
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 3.5e-10 68.6 31 87.1
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.5e-08 63.2 28 92.9
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.5e-08 63.2 28 92.9
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.5e-08 63.2 30 83.3


User provided reference genes

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