Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021350 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D017466 1.9e-33 145.2 70 100.0
CSS0000429 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D017466 1.8e-23 112.1 70 81.4
CSS0036160 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 3.2e-17 91.3 63 77.8
CSS0038767 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 3.2e-17 91.3 63 77.8
Cpa.g.sc18.186 Carica papaya HOM05D000602 ORTHO05D002573 1.7e-13 79.0 63 68.3
Lsat_1_v5_gn_3_136701 Lactuca sativa HOM05D000602 ORTHO05D002573 2.2e-13 78.6 63 66.7
Dinv43780 Davidia involucrata HOM05D000602 ORTHO05D002573 6.3e-13 77.0 63 66.7
Atru.chr5.443 Acer truncatum HOM05D000602 ORTHO05D002573 1.1e-12 76.3 63 63.5
COL.COLO4_12663 Corchorus olitorius HOM05D000602 ORTHO05D002573 1.1e-12 76.3 63 65.1
CSS0037990 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.4e-12 75.9 63 68.3
TAR374G0975 Trochodendron aralioides HOM05D000602 ORTHO05D002573 3.1e-12 74.7 63 63.5
HanXRQChr03g0093501 Helianthus annuus HOM05D000602 ORTHO05D002573 7.0e-12 73.6 63 61.9
Thecc.01G365100 Theobroma cacao HOM05D000602 ORTHO05D002573 7.0e-12 73.6 63 61.9
Actinidia38308 Actinidia chinensis HOM05D000602 ORTHO05D002573 9.1e-12 73.2 63 63.5
CiPaw.01G056400 Carya illinoinensis HOM05D000602 ORTHO05D002573 9.1e-12 73.2 63 63.5
Nn1g01428 Nelumbo nucifera HOM05D000602 ORTHO05D002573 9.1e-12 73.2 63 60.3
PGR031G1425 Punica granatum HOM05D000602 ORTHO05D002573 9.1e-12 73.2 63 61.9
Rhsim07G0018800 Rhododendron simsii HOM05D000602 ORTHO05D002573 9.1e-12 73.2 62 61.3
ATR0680G410 Amborella trichopoda HOM05D000602 ORTHO05D002573 1.2e-11 72.8 63 63.5
HPP92_002420 Vanilla planifolia HOM05D000602 ORTHO05D017466 1.2e-11 72.8 63 61.9
HPP92_002427 Vanilla planifolia HOM05D000602 ORTHO05D017466 1.2e-11 72.8 63 61.9
GSVIVG01026824001 Vitis vinifera HOM05D000602 ORTHO05D002573 1.2e-11 72.8 63 60.3
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.6e-11 72.4 63 61.9
BcaNung05356 Brassica carinata HOM05D000602 ORTHO05D002573 1.6e-11 72.4 64 53.1
Haze_15462 Corylus avellana HOM05D000602 ORTHO05D002573 2.0e-11 72.0 63 60.3
Prupe.2G160000 Prunus persica HOM05D000602 ORTHO05D002573 2.0e-11 72.0 63 60.3
Aqoxy5G03954 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 4.5e-11 70.9 63 58.7
CANSAT56G0553 Cannabis sativa HOM05D000602 ORTHO05D002573 4.5e-11 70.9 63 61.9
ECA240G3358 Erigeron canadensis HOM05D000602 ORTHO05D002573 4.5e-11 70.9 63 60.3
TWI59G0725 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 4.5e-11 70.9 63 60.3
TPR.G9812 Trifolium pratense HOM05D000602 ORTHO05D002573 5.9e-11 70.5 63 58.7
Aqoxy7G00370 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 7.7e-11 70.1 60 60.0
Duzib268G0618 Durio zibethinus HOM05D000602 ORTHO05D002573 7.7e-11 70.1 63 58.7
FvH4_7g13590 Fragaria vesca HOM05D000602 ORTHO05D002573 7.7e-11 70.1 63 58.7
Medtr8g032040 Medicago truncatula HOM05D000602 ORTHO05D002573 7.7e-11 70.1 63 58.7
TWI23G1023 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 7.7e-11 70.1 60 60.0
Eucgr.D02251 Eucalyptus grandis HOM05D000602 ORTHO05D002573 1.0e-10 69.7 63 57.1
Phvul.010G094700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 1.0e-10 69.7 63 60.3
RcHm_v2.0_Chr1g0353381 Rosa chinensis HOM05D000602 ORTHO05D002573 1.0e-10 69.7 62 61.3
VMungo0331G0435 Vigna mungo HOM05D000602 ORTHO05D002573 1.0e-10 69.7 63 60.3
MBI18_g09780_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 1.3e-10 69.3 63 55.6
Manes.01G260100 Manihot esculenta HOM05D000602 ORTHO05D002573 1.3e-10 69.3 63 58.7
QL08p049812 Quercus lobata HOM05D000602 ORTHO05D002573 1.3e-10 69.3 62 59.7
Peaxi162Scf00397g00526 Petunia axillaris HOM05D000602 ORTHO05D002573 1.7e-10 68.9 59 61.0
THA.LOC104801455 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 1.7e-10 68.9 63 54.0
Glyma.03G014600 Glycine max HOM05D000602 ORTHO05D002573 2.2e-10 68.6 63 58.7
Duzib138G1809 Durio zibethinus HOM05D000602 ORTHO05D002573 2.9e-10 68.2 63 55.6
FAN10G2205 Fragaria x ananassa HOM05D000602 ORTHO05D002573 2.9e-10 68.2 63 57.1
FAN10G4318 Fragaria x ananassa HOM05D000602 ORTHO05D002573 2.9e-10 68.2 63 57.1
Gohir.D07G149300 Gossypium hirsutum HOM05D000602 ORTHO05D002573 2.9e-10 68.2 63 57.1
Gorai.001G170700 Gossypium raimondii HOM05D000602 ORTHO05D002573 2.9e-10 68.2 63 57.1
BcaB01g02259 Brassica carinata HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 50.8
BcaC01g06869 Brassica carinata HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 50.8
A03p32130 Brassica napus HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 50.8
C03p39160 Brassica napus HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 50.8
BolC3t16186H Brassica oleracea HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 50.8
BraA03t12383Z Brassica rapa HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 50.8
HanXRQChr04g0121671 Helianthus annuus HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 58.7
Nitab4.5_0006669g0030 Nicotiana tabacum HOM05D000602 ORTHO05D002573 3.8e-10 67.8 59 62.7
Nitab4.5_0029200g0010 Nicotiana tabacum HOM05D000602 ORTHO05D013773 3.8e-10 67.8 59 62.7
PSO478G4088 Papaver somniferum HOM05D000602 ORTHO05D002573 3.8e-10 67.8 62 58.1
PSO782G2006 Papaver somniferum HOM05D000602 ORTHO05D002573 3.8e-10 67.8 62 58.1
Potri.014G079900 Populus trichocarpa HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 60.3
THA.LOC104817017 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 3.8e-10 67.8 63 54.0
BcaC04g24160 Brassica carinata HOM05D000602 ORTHO05D002573 5.0e-10 67.4 63 50.8
BolC9t52982H Brassica oleracea HOM05D000602 ORTHO05D002573 5.0e-10 67.4 63 50.8
BraA09t35719Z Brassica rapa HOM05D000602 ORTHO05D002573 5.0e-10 67.4 63 50.8
arahy.Tifrunner.gnm1.ann1.4G7KVK Arachis hypogaea HOM05D000602 ORTHO05D002573 6.5e-10 67.0 63 55.6
Sp6g00610 Schrenkiella parvula HOM05D000602 ORTHO05D002573 6.5e-10 67.0 63 50.8
Gohir.A07G143500 Gossypium hirsutum HOM05D000602 ORTHO05D002573 8.5e-10 66.6 63 57.1
Lj3g0018490 Lotus japonicus HOM05D000602 ORTHO05D002573 8.5e-10 66.6 63 57.1
Aa31LG5G420 Aethionema arabicum HOM05D000602 ORTHO05D002573 1.1e-09 66.2 63 49.2
AT4G00570 Arabidopsis thaliana HOM05D000602 ORTHO05D002573 1.1e-09 66.2 63 50.8
Carub.0006s3665 Capsella rubella HOM05D000602 ORTHO05D002573 1.1e-09 66.2 63 49.2
Lalb_Chr17g0339901 Lupinus albus HOM05D000602 ORTHO05D002573 1.1e-09 66.2 63 57.1
Oeu014685.1 Olea europaea HOM05D000602 ORTHO05D002573 1.1e-09 66.2 63 55.6
Glyma.07G074700 Glycine max HOM05D000602 ORTHO05D002573 1.5e-09 65.9 63 57.1
MD01G1052400 Malus domestica HOM05D000602 ORTHO05D002573 1.5e-09 65.9 62 58.1
Potri.002G156000 Populus trichocarpa HOM05D000602 ORTHO05D002573 1.5e-09 65.9 63 55.6
CAN.G78.18 Capsicum annuum HOM05D000602 ORTHO05D002573 1.9e-09 65.5 59 59.3
Sabra02G0123900 Salix brachista HOM05D000602 ORTHO05D002573 1.9e-09 65.5 63 57.1
Sed0013968 Sechium edule HOM05D000602 ORTHO05D002573 1.9e-09 65.5 63 54.0
Solyc01g094200.4 Solanum lycopersicum HOM05D000602 ORTHO05D002573 2.5e-09 65.1 59 59.3
Sopen01g038000 Solanum pennellii HOM05D000602 ORTHO05D002573 2.5e-09 65.1 59 59.3
PGSC0003DMG401000020 Solanum tuberosum HOM05D000602 ORTHO05D002573 2.5e-09 65.1 59 59.3
AL6G52860 Arabidopsis lyrata HOM05D000602 ORTHO05D002573 3.2e-09 64.7 63 49.2
EL10Ac1g00523 Beta vulgaris HOM05D000602 ORTHO05D002573 3.2e-09 64.7 63 55.6
unitig_0.g1279 Utricularia gibba HOM05D000602 ORTHO05D002573 3.2e-09 64.7 63 52.4
Ciclev10019380m.g Citrus clementina HOM05D000602 ORTHO05D002573 4.2e-09 64.3 63 54.0
FAN06G1738 Fragaria x ananassa HOM05D000602 ORTHO05D002573 4.2e-09 64.3 58 56.9
FAN06G1931 Fragaria x ananassa HOM05D000602 ORTHO05D002573 4.2e-09 64.3 58 56.9
Ca_23726_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 5.5e-09 63.9 63 55.6
Lj9C579T5 Lonicera japonica HOM05D000602 ORTHO05D002573 5.5e-09 63.9 60 56.7
Phvul.008G068700 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 5.5e-09 63.9 62 56.5
ClCG06G000010 Citrullus lanatus HOM05D000602 ORTHO05D002573 7.2e-09 63.5 63 52.4
Cc02_g37470 Coffea canephora HOM05D000602 ORTHO05D002573 7.2e-09 63.5 63 57.1
MELO3C022537.2 Cucumis melo HOM05D000602 ORTHO05D002573 7.2e-09 63.5 63 52.4
Migut.B01710 Erythranthe guttata HOM05D000602 ORTHO05D002573 7.2e-09 63.5 63 52.4
Lsat_1_v5_gn_7_5301 Lactuca sativa HOM05D000602 ORTHO05D002573 7.2e-09 63.5 63 55.6
Lalb_Chr10g0097281 Lupinus albus HOM05D000602 ORTHO05D002573 7.2e-09 63.5 62 54.8
CARHR248740 Cardamine hirsuta HOM05D000602 ORTHO05D002573 9.4e-09 63.2 63 47.6
CsaV3_6G005750 Cucumis sativus L. HOM05D000602 ORTHO05D002573 9.4e-09 63.2 63 52.4
MD07G1129000 Malus domestica HOM05D000602 ORTHO05D002573 9.4e-09 63.2 62 54.8
HanXRQChr06g0169901 Helianthus annuus HOM05D000602 ORTHO05D002573 1.2e-08 62.8 62 54.8
VMungo1383G3458 Vigna mungo HOM05D000602 ORTHO05D002573 1.2e-08 62.8 62 54.8
Ah.05g176410 Amaranthus hybridus HOM05D000602 ORTHO05D002573 1.6e-08 62.4 63 55.6
MSTRG.20809 Avicennia marina HOM05D000602 ORTHO05D002573 1.6e-08 62.4 63 54.0
Glyma.09G262900 Glycine max HOM05D000602 ORTHO05D002573 2.7e-08 61.6 62 56.5
Zm00001eb220780 Zea mays HOM05D000602 ORTHO05D002573 2.7e-08 61.6 63 55.6
ECA236G4524 Erigeron canadensis HOM05D000602 ORTHO05D002573 3.6e-08 61.2 63 52.4
TPR.G22745 Trifolium pratense HOM05D000602 ORTHO05D002573 3.6e-08 61.2 63 54.0
Gohir.A11G082400 Gossypium hirsutum HOM05D000602 ORTHO05D002573 4.7e-08 60.8 63 55.6
SGA_v2.0_scaffold277G46677 Striga asiatica HOM05D000602 ORTHO05D002573 6.1e-08 60.5 58 55.2
arahy.Tifrunner.gnm1.ann1.EN2TM4 Arachis hypogaea HOM05D000602 ORTHO05D017466 8.0e-08 60.1 63 50.8
Glyma.18G229300 Glycine max HOM05D000602 ORTHO05D002573 8.0e-08 60.1 62 56.5
Os10g0503500 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 8.0e-08 60.1 63 49.2
SGA_v2.0_scaffold115G32164 Striga asiatica HOM05D000602 ORTHO05D002573 1.0e-07 59.7 63 52.4
Gohir.D11G091100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 1.4e-07 59.3 63 54.0
Gorai.007G097100 Gossypium raimondii HOM05D000602 ORTHO05D002573 1.4e-07 59.3 63 54.0
Prupe.2G160200 Prunus persica HOM05D000602 ORTHO05D017466 1.8e-07 58.9 59 54.2
CDE04G1559 Ceratophyllum demersum HOM05D000602 ORTHO05D002573 2.3e-07 58.5 63 50.8
Medtr7g076650 Medicago truncatula HOM05D000602 ORTHO05D002573 4.0e-07 57.8 62 50.0
Sed0021943 Sechium edule HOM05D000602 ORTHO05D002573 4.0e-07 57.8 63 47.6
Cfa003960 Carpinus fangiana HOM05D000602 ORTHO05D002573 5.2e-07 57.4 51 60.8
Psat3g111680 Pisum sativum HOM05D000602 ORTHO05D002573 6.7e-07 57.0 62 51.6
Ca_07885_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 2.6e-06 55.1 62 50.0


User provided reference genes

Program Settings