Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1738.4 849 100.0
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1721.4 849 99.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1384.4 974 71.5
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1382.1 811 81.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1349.7 850 76.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1343.6 809 79.9
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1339.7 851 74.0
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1338.9 824 77.5
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1328.9 850 74.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1326.2 852 74.2
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1315.1 847 73.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1312.4 850 73.4
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1308.5 849 72.4
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1308.1 851 73.2
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1305.8 854 73.1
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1305.4 881 70.8
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1305.4 889 71.8
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1300.8 851 72.9
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1299.3 853 72.7
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1295.0 852 72.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1294.6 853 72.5
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1293.5 853 72.2
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1282.7 851 72.3
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1279.2 849 71.7
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1271.1 853 70.7
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1270.8 854 71.2
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1270.8 851 70.3
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1266.9 849 69.3
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1266.5 853 70.1
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1261.1 854 69.8
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1257.3 852 70.4
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1255.4 855 69.7
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1251.9 847 69.8
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1251.1 853 70.1
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1250.7 849 69.4
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1246.9 859 68.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1244.2 852 69.6
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1242.3 855 70.4
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1238.8 850 69.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1237.2 849 69.5
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1236.9 852 68.2
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1234.6 847 68.1
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1234.2 848 69.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 867 67.9
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1230.3 850 68.9
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1229.5 853 69.1
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1229.2 849 68.4
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 850 68.8
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1221.8 862 68.1
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1221.8 856 68.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1218.4 849 67.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1213.7 855 68.3
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1212.2 848 68.4
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1212.2 874 66.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1210.7 849 68.1
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1208.0 855 68.0
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1206.0 855 68.1
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1205.3 850 68.2
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1199.1 855 67.5
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1194.9 847 65.6
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1193.3 856 67.8
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 850 66.7
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 854 68.0
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1189.1 849 66.8
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1187.9 848 67.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1184.9 848 67.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1173.7 851 64.6
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 856 66.2
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1171.4 852 64.8
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1169.8 850 64.4
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 851 67.7
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 860 65.2
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1161.4 853 64.1
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1158.3 853 64.2
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1157.1 884 62.4
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 850 65.9
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1154.4 855 64.1
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 854 63.8
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 856 65.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 846 64.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 868 62.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1142.5 887 61.8
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1140.2 870 63.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1139.4 845 65.6
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1139.0 851 65.5
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 844 63.3
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 858 63.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1114.0 727 71.4
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 752 68.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1110.1 763 70.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 0.0e+00 1105.9 852 63.8
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1103.6 846 62.4
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 838 62.9
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1095.5 770 65.5
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 772 65.9
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 0.0e+00 1088.6 718 70.5
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1086.2 858 61.4
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 770 65.6
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1084.7 778 65.7
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 775 64.9
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 5.8e-312 1073.9 876 60.4
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.7e-311 1072.4 771 63.9
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 2.0e-310 1068.9 776 64.6
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.4e-308 1062.0 769 63.6
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.4e-308 1062.0 813 62.2
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.2e-307 1059.7 854 60.5
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 2.0e-307 1058.9 773 64.0
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.5e-305 1052.0 820 59.9
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 5.2e-303 1044.3 775 63.4
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 6.8e-303 1043.9 769 61.8
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.9e-298 1028.1 777 62.7
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 7.3e-297 1023.8 909 56.5
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 9.5e-297 1023.5 851 58.5
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 6.4e-293 1010.7 770 62.1
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.1e-292 1008.1 840 57.4
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-289 1000.0 854 59.0
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.0e-274 950.3 801 57.7
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 9.3e-268 927.2 650 69.7
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 7.4e-257 891.0 857 51.7
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 5.8e-254 881.3 598 72.1
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.5e-249 866.7 768 55.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 4.2e-244 848.6 797 53.1
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 4.6e-243 845.1 821 50.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 5.0e-237 825.1 844 48.3
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 9.4e-228 794.3 627 60.8
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.3e-224 781.6 788 48.2
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.9e-220 770.0 662 59.1
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.9e-214 748.4 471 71.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 2.5e-212 743.0 776 49.6
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.1e-207 727.6 435 74.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.0e-197 694.5 663 49.9
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.8e-194 681.8 429 71.3
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 6.8e-186 655.2 587 57.1
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 6.4e-184 648.7 470 67.7
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 5.0e-181 639.0 530 59.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 2.3e-178 630.2 426 68.1
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.5e-177 627.5 669 50.7
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 7.1e-167 592.0 874 38.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.0e-153 547.4 581 51.5
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.4e-146 523.9 777 41.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 6.9e-138 495.7 406 61.6
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 6.5e-136 489.2 434 59.0
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.7e-132 476.1 321 67.9
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.2e-127 460.3 271 77.5
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.1e-122 443.7 340 62.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.2e-113 415.2 404 54.5
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 6.1e-110 402.9 425 52.2
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 8.2e-107 392.5 399 55.9
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 3.8e-96 357.1 242 69.4
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.6e-86 323.9 529 35.3
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 7.5e-84 316.2 820 31.0
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 2.9e-75 287.7 205 66.8
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.2e-67 261.5 202 59.4
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-55 222.2 167 61.1
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.1e-53 214.5 139 71.2
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 7.8e-49 199.9 124 72.6
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.9e-43 181.4 193 50.3
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.5e-39 169.1 100 75.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 2.7e-33 148.3 197 39.6
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 8.1e-30 136.7 97 66.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 5.8e-28 130.6 123 56.9
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 3.8e-27 127.9 86 66.3
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.3e-24 119.4 84 66.7
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.1e-23 116.3 78 67.9
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.3e-22 112.8 92 60.9
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.2e-20 106.3 84 60.7
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.9e-19 101.7 61 80.3
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.4e-18 99.4 81 61.7
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 4.3e-15 87.8 46 82.6
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.3e-14 84.0 40 85.0
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.8e-13 82.4 39 87.2
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 4.5e-12 77.8 59 64.4
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.5e-10 72.0 44 77.3
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 2.7e-09 68.6 69 55.1
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 6.1e-09 67.4 95 37.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.0e-08 66.6 94 38.3


User provided reference genes

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