Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.0e-31 139.4 68 100.0
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 7.2e-14 80.1 67 64.2
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 7.2e-14 80.1 67 64.2
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 7.2e-14 80.1 67 64.2
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 7.2e-14 80.1 67 64.2
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 7.2e-14 80.1 67 64.2
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 1.2e-13 79.3 67 64.2
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.6e-13 79.0 67 64.2
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.7e-13 78.2 67 62.7
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 3.6e-13 77.8 67 62.7
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 3.6e-13 77.8 67 62.7
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.6e-13 77.8 67 62.7
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.6e-13 77.8 67 62.7
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 3.6e-13 77.8 67 62.7
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 3.6e-13 77.8 67 62.7
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 3.6e-13 77.8 67 62.7
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.7e-13 77.4 67 62.7
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 6.1e-13 77.0 67 61.2
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.1e-13 77.0 66 63.6
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.1e-13 77.0 66 63.6
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 6.1e-13 77.0 67 61.2
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 6.1e-13 77.0 67 62.7
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 6.1e-13 77.0 67 62.7
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 6.1e-13 77.0 66 63.6
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 6.1e-13 77.0 67 62.7
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 6.1e-13 77.0 76 59.2
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 6.1e-13 77.0 67 62.7
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 6.1e-13 77.0 67 62.7
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 8.0e-13 76.6 67 61.2
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 8.0e-13 76.6 62 66.1
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 8.0e-13 76.6 62 66.1
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 8.0e-13 76.6 62 66.1
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 8.0e-13 76.6 67 62.7
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 1.0e-12 76.3 67 62.7
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.0e-12 76.3 67 62.7
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.0e-12 76.3 67 61.2
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.0e-12 76.3 67 61.2
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.0e-12 76.3 67 62.7
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 1.0e-12 76.3 67 62.7
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.0e-12 76.3 66 62.1
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 1.4e-12 75.9 67 61.2
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 1.4e-12 75.9 66 62.1
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.4e-12 75.9 67 62.7
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 1.4e-12 75.9 67 61.2
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 1.4e-12 75.9 67 61.2
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 1.4e-12 75.9 66 62.1
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.8e-12 75.5 66 62.1
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 2.3e-12 75.1 67 61.2
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.3e-12 75.1 62 64.5
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 2.3e-12 75.1 67 59.7
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 3.0e-12 74.7 67 61.2
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 3.0e-12 74.7 67 61.2
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 3.0e-12 74.7 67 61.2
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.0e-12 74.3 66 60.6
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 4.0e-12 74.3 66 60.6
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 5.2e-12 73.9 67 59.7
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 5.2e-12 73.9 67 61.2
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 6.8e-12 73.6 67 59.7
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 6.8e-12 73.6 67 59.7
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 6.8e-12 73.6 67 61.2
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 6.8e-12 73.6 67 59.7
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 8.8e-12 73.2 61 63.9
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 8.8e-12 73.2 66 60.6
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 8.8e-12 73.2 67 61.2
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 8.8e-12 73.2 66 59.1
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 8.8e-12 73.2 62 61.3
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.2e-11 72.8 67 59.7
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.5e-11 72.4 66 60.6
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.5e-11 72.4 67 58.2
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 1.5e-11 72.4 67 58.2
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.5e-11 72.4 67 58.2
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.5e-11 72.4 66 59.1
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.0e-11 72.0 66 59.1
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 2.0e-11 72.0 67 58.2
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 2.0e-11 72.0 67 59.7
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-11 72.0 66 60.6
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 2.0e-11 72.0 64 60.9
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 3.4e-11 71.2 66 59.1
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.4e-11 71.2 66 57.6
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 4.4e-11 70.9 66 59.1
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 5.7e-11 70.5 67 58.2
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 5.7e-11 70.5 63 60.3
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 5.7e-11 70.5 66 56.1
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 5.7e-11 70.5 66 59.1
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 5.7e-11 70.5 66 54.5
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 7.5e-11 70.1 69 56.5
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 9.8e-11 69.7 65 56.9
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 9.8e-11 69.7 68 54.4
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 1.7e-10 68.9 77 54.5
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.7e-10 68.9 67 55.2
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.2e-10 68.6 66 54.5
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.2e-10 68.6 66 54.5
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 2.2e-10 68.6 66 56.1
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.2e-10 68.6 66 56.1
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 2.2e-10 68.6 66 54.5
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.2e-10 68.6 66 56.1
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.8e-10 68.2 63 57.1
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.8e-10 68.2 65 60.0
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 2.8e-10 68.2 64 56.2
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 3.7e-10 67.8 58 62.1
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 3.7e-10 67.8 66 53.0
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 4.8e-10 67.4 65 58.5
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 8.3e-10 66.6 70 55.7
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 1.1e-09 66.2 66 57.6
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.1e-09 66.2 61 57.4
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 1.1e-09 66.2 66 54.5
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.4e-09 65.9 83 50.6
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.8e-09 65.5 38 81.6
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 2.4e-09 65.1 38 78.9
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.1e-09 64.7 32 93.8
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.1e-09 64.7 66 53.0
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.1e-09 64.7 66 53.0
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 4.1e-09 64.3 38 76.3
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 4.1e-09 64.3 66 53.0
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 4.1e-09 64.3 36 83.3
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 5.4e-09 63.9 38 76.3
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 5.4e-09 63.9 38 76.3
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 5.4e-09 63.9 38 76.3
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 5.4e-09 63.9 38 76.3
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 9.1e-09 63.2 60 55.0
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 7.7e-08 60.1 38 71.1
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.0e-07 59.7 66 47.0
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.3e-07 58.5 63 50.8
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.3e-07 58.5 38 65.8


User provided reference genes

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