Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 2.3e-243 845.1 413 100.0
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.1e-194 683.3 418 83.0
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.0e-187 660.2 418 81.6
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.8e-187 659.4 418 81.3
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 2.0e-162 576.2 416 71.2
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 1.3e-158 563.5 418 70.3
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.3e-155 552.7 416 69.0
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 5.1e-155 551.6 420 68.6
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 8.2e-153 544.3 446 65.0
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 7.0e-152 541.2 416 66.6
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.2e-151 540.4 418 65.1
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 3.3e-146 522.3 418 63.9
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 5.7e-146 521.5 416 65.1
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 2.2e-145 519.6 416 63.9
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 3.7e-145 518.8 416 64.7
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 3.7e-145 518.8 416 63.9
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 3.7e-145 518.8 418 63.6
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 1.1e-144 517.3 418 63.6
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 1.8e-144 516.5 416 63.7
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 4.1e-144 515.4 416 64.2
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 5.3e-144 515.0 418 62.0
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 1.2e-143 513.8 418 63.4
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 2.0e-143 513.1 416 63.7
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 2.7e-143 512.7 416 62.0
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 4.5e-143 511.9 418 63.4
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 4.5e-143 511.9 416 63.0
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 4.5e-143 511.9 416 63.0
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 4.5e-143 511.9 418 61.5
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 1.3e-142 510.4 416 64.4
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 2.2e-142 509.6 416 63.5
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 2.9e-142 509.2 417 63.1
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 8.5e-142 507.7 416 62.7
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 1.1e-141 507.3 418 60.8
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.1e-141 507.3 416 62.3
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 1.5e-141 506.9 417 63.1
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 5.5e-141 505.0 416 62.7
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 1.6e-140 503.4 419 62.3
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.1e-140 503.1 418 61.5
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 2.7e-140 502.7 421 61.5
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 3.6e-140 502.3 416 62.0
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 4.7e-140 501.9 416 62.5
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 8.0e-140 501.1 418 61.5
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 8.0e-140 501.1 416 61.5
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 1.0e-139 500.7 419 62.5
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.8e-139 500.0 417 61.6
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 4.0e-139 498.8 418 60.5
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 4.4e-138 495.4 416 61.8
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 4.4e-138 495.4 418 60.5
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 5.7e-138 495.0 415 61.4
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 7.5e-138 494.6 419 61.3
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 7.5e-138 494.6 416 59.6
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.7e-137 493.4 412 61.2
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 1.7e-137 493.4 418 59.6
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 2.2e-137 493.0 416 61.3
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 4.8e-137 491.9 416 58.9
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 3.1e-136 489.2 417 60.4
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 9.1e-136 487.6 416 60.6
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 9.1e-136 487.6 413 62.2
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 1.2e-135 487.3 417 59.5
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 1.6e-135 486.9 418 59.8
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 2.7e-135 486.1 418 59.3
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 3.5e-135 485.7 418 61.5
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 1.0e-134 484.2 417 59.7
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 2.2e-134 483.0 417 60.0
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 2.2e-134 483.0 417 60.0
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 2.9e-134 482.6 419 57.8
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 1.1e-133 480.7 419 59.7
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.5e-133 480.3 418 61.5
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 1.9e-133 479.9 419 60.9
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 7.2e-133 478.0 419 57.5
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.7e-132 476.1 413 59.3
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 2.7e-132 476.1 419 57.3
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 4.7e-132 475.3 580 47.8
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 8.0e-132 474.6 418 59.6
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 1.0e-131 474.2 416 57.2
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 1.0e-131 474.2 418 58.1
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 1.2e-130 470.7 417 57.6
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 1.5e-130 470.3 418 58.1
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 1.5e-130 470.3 417 57.6
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 2.0e-130 469.9 417 57.3
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 2.6e-130 469.5 416 57.0
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 4.4e-130 468.8 419 59.4
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 5.7e-130 468.4 416 57.0
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 7.5e-130 468.0 419 58.7
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 7.5e-130 468.0 419 57.0
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 6.3e-129 464.9 419 56.8
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 5.4e-128 461.8 416 57.7
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.2e-127 460.7 416 56.7
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 1.3e-126 457.2 417 58.5
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 9.5e-125 451.1 417 60.0
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 1.2e-124 450.7 414 58.0
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 1.8e-123 446.8 440 53.0
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 3.0e-123 446.0 414 56.8
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 1.2e-122 444.1 412 55.3
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 2.0e-122 443.4 293 75.1
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 3.4e-122 442.6 420 55.0
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 3.4e-122 442.6 423 54.6
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 7.5e-122 441.4 408 52.7
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 7.8e-119 431.4 325 68.6
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 1.0e-118 431.0 389 57.6
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 6.6e-118 428.3 419 53.9
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 2.5e-117 426.4 415 53.0
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 2.5e-117 426.4 418 55.3
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 5.6e-117 425.2 415 53.0
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 7.3e-117 424.9 415 52.8
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 1.6e-116 423.7 425 53.2
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 2.1e-116 423.3 430 55.3
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 3.6e-116 422.5 415 51.8
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 1.0e-115 421.0 415 51.6
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 5.2e-115 418.7 415 52.3
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 5.8e-114 415.2 415 51.8
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 5.8e-114 415.2 415 51.8
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 7.5e-114 414.8 415 51.8
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 7.5e-114 414.8 415 51.8
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 1.7e-113 413.7 415 50.8
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.9e-113 412.9 379 57.5
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 6.4e-113 411.8 415 50.8
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 6.4e-113 411.8 414 51.2
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 6.4e-113 411.8 415 50.6
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 6.4e-113 411.8 414 51.2
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 8.3e-113 411.4 372 55.1
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 1.9e-112 410.2 415 51.3
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 5.4e-112 408.7 415 51.8
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 9.2e-112 407.9 415 51.1
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 9.2e-112 407.9 444 51.8
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 6.0e-111 405.2 416 55.0
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 3.9e-110 402.5 376 52.9
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 6.6e-110 401.7 381 54.9
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.9e-109 400.2 442 51.6
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.6e-108 397.1 431 52.2
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 2.8e-108 396.4 439 51.0
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 1.8e-107 393.7 417 51.6
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 6.8e-107 391.7 369 58.0
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 4.4e-106 389.0 411 53.3
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 1.9e-104 383.6 390 54.1
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 2.8e-100 369.8 416 49.0
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 4.7e-100 369.0 416 48.8
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 2.2e-97 360.1 411 49.4
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 2.9e-97 359.8 349 54.2
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 3.7e-97 359.4 294 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 1.9e-93 347.1 419 42.7
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.3e-93 346.3 416 43.5
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 9.6e-93 344.7 414 43.0
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 9.6e-93 344.7 414 43.0
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.9e-88 330.5 419 41.1
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 4.2e-88 329.3 429 41.5
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 4.8e-84 315.8 424 40.1
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.1e-83 314.7 415 40.7
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.1e-83 314.7 420 40.7
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 9.0e-83 311.6 424 39.9
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.4e-82 309.7 424 39.6
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 3.8e-81 306.2 411 42.8
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 7.1e-80 302.0 430 44.2
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 5.6e-77 292.4 451 38.8
SHI06939 Sapria himalayana HOM05D003472 ORTHO05D004200 1.2e-66 258.1 318 46.2
SEGI_01865 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 7.6e-66 255.4 246 50.4
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 1.3e-65 254.6 287 47.7
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 1.1e-61 241.5 284 47.9
Potri.006G068300 Populus trichocarpa HOM05D003472 ORTHO05D004200 9.0e-59 231.9 124 83.9
SEGI_13496 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.2e-57 227.3 259 43.6
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 3.8e-57 226.5 421 36.6
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 9.3e-56 221.9 285 46.0
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 3.1e-51 206.8 434 31.3
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 5.3e-51 206.1 489 31.3
Thecc.03G304900 Theobroma cacao HOM05D003472 ORTHO05D004200 4.2e-48 196.4 177 57.6
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 1.8e-46 191.0 379 35.6
Ca_29384_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 9.1e-43 178.7 395 31.9
C09p32980 Brassica napus HOM05D003472 ORTHO05D004200 1.8e-35 154.5 197 43.1
BcaC04g21340 Brassica carinata HOM05D003472 ORTHO05D004200 1.2e-34 151.8 183 44.8
SEGI_06448 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 5.9e-34 149.4 160 51.2
BolC9t56133H Brassica oleracea HOM05D003472 ORTHO05D004200 1.0e-33 148.7 196 43.9
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 3.3e-29 133.7 78 83.3
EL10Ac1g01459 Beta vulgaris HOM05D003472 ORTHO05D039007 1.2e-26 125.2 91 64.8
PGR031G0091 Punica granatum HOM05D003472 ORTHO05D004200 5.9e-26 122.9 150 46.0
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.5e-24 118.2 216 36.6
TPR.G36092 Trifolium pratense HOM05D003472 ORTHO05D004200 8.0e-23 112.5 55 83.6
Cfa011954 Carpinus fangiana HOM05D003472 ORTHO05D016557 1.8e-22 111.3 81 69.1
RcHm_v2.0_Chr6g0261321 Rosa chinensis HOM05D003472 ORTHO05D039007 5.2e-22 109.8 62 79.0
QL02p005551 Quercus lobata HOM05D000369 ORTHO05D004200 4.9e-12 76.6 68 55.9
CAN.G715.3 Capsicum annuum HOM05D003472 ORTHO05D004200 4.1e-11 73.6 145 33.8
SEGI_32363 Sequoiadendron giganteum HOM05D003472 ORTHO05D049298 2.8e-07 60.8 39 64.1
Nn7g36715 Nelumbo nucifera HOM05D003472 ORTHO05D049298 3.6e-07 60.5 101 39.6
Aa31LG6G7240 Aethionema arabicum HOM05D003472 ORTHO05D004200 3.0e-06 57.4 33 72.7
Lalb_Chr05g0223891 Lupinus albus HOM05D003472 ORTHO05D004200 4.0e-06 57.0 53 54.7
QL04p070330 Quercus lobata HOM05D000064 ORTHO05D001902 5.2e-06 56.6 39 64.1


User provided reference genes

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