Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.5e-219 763.8 409 100.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.6e-203 710.3 446 88.8
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.0e-160 568.5 428 73.1
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.0e-152 540.8 410 72.2
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 2.0e-143 513.1 434 66.6
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 5.8e-143 511.5 443 67.3
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.9e-142 509.2 431 66.1
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.1e-141 507.3 457 64.1
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 3.2e-141 505.8 480 62.9
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.6e-140 503.4 418 71.8
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 3.5e-140 502.3 446 63.7
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 9.7e-138 494.2 463 61.3
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 8.2e-137 491.1 462 60.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.4e-136 490.3 442 62.4
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.0e-135 486.5 450 61.6
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.0e-135 486.5 450 61.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.0e-135 486.5 424 66.3
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.6e-135 486.1 450 61.3
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.8e-134 482.3 444 61.5
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 8.5e-134 481.1 434 63.1
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.1e-133 480.7 438 61.6
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.5e-133 479.6 461 62.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 5.5e-133 478.4 452 62.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 7.2e-133 478.0 463 59.4
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.6e-132 476.9 431 60.6
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 3.6e-132 475.7 453 60.5
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.8e-131 473.4 457 60.8
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.9e-131 472.2 447 62.4
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.1e-130 470.7 445 60.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.5e-130 469.5 443 61.4
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.3e-130 468.8 494 56.5
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.3e-129 467.2 457 59.5
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.2e-129 466.5 449 59.9
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.8e-129 466.1 431 61.9
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.1e-128 464.2 493 58.2
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.8e-128 463.4 450 62.4
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 4.1e-128 462.2 465 61.3
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 5.3e-128 461.8 446 62.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 5.3e-128 461.8 489 56.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.1e-128 461.1 488 56.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 9.1e-128 461.1 489 59.1
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.5e-127 460.3 435 62.3
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.6e-127 459.5 459 57.7
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.6e-127 459.5 445 60.7
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 5.9e-127 458.4 489 57.9
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 7.7e-127 458.0 498 57.0
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.0e-126 457.6 452 60.8
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.9e-126 456.1 424 61.3
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 6.5e-126 454.9 446 59.4
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-125 454.1 410 65.4
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.4e-125 453.8 461 58.8
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.6e-124 450.3 481 58.8
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.8e-123 446.8 491 57.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.3e-123 446.4 459 59.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 6.7e-123 444.9 410 60.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 6.7e-123 444.9 427 62.5
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 9.7e-122 441.0 423 63.4
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.1e-120 437.6 422 64.9
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.1e-120 437.6 520 52.7
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.4e-120 436.4 460 58.0
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 3.1e-120 436.0 449 58.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 5.3e-120 435.3 484 57.6
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.5e-119 433.7 509 53.8
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.6e-119 433.0 438 62.8
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.7e-118 430.3 492 53.7
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 5.0e-118 428.7 510 53.1
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 8.5e-118 427.9 440 55.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 9.4e-117 424.5 443 56.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 2.7e-116 422.9 452 59.3
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.4e-115 420.6 474 53.4
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.8e-115 420.2 472 54.0
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 6.7e-115 418.3 408 63.5
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.1e-114 417.5 428 61.0
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 2.0e-114 416.8 441 59.9
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 2.2e-113 413.3 432 54.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 2.8e-113 412.9 443 56.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 2.8e-113 412.9 428 59.6
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 3.7e-113 412.5 448 54.9
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.1e-112 411.0 429 56.2
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 5.3e-112 408.7 430 54.9
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.2e-110 403.3 434 56.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.9e-109 400.2 412 56.3
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.2e-109 399.1 452 55.3
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 9.4e-109 397.9 432 58.8
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.1e-108 396.7 431 58.0
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.1e-108 395.2 431 58.5
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 8.0e-108 394.8 469 53.1
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-107 394.0 438 54.3
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.3e-107 393.3 467 56.5
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 8.8e-107 391.3 429 54.8
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 4.4e-106 389.0 463 54.6
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 9.7e-106 387.9 494 49.4
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.1e-104 384.4 431 58.0
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 9.1e-104 381.3 428 56.8
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.0e-102 377.9 444 56.8
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 3.8e-102 375.9 433 55.9
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 9.4e-101 371.3 440 53.4
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.8e-99 367.1 495 51.7
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.8e-99 364.8 377 56.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 3.4e-98 362.8 416 52.2
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.4e-98 362.8 394 57.4
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.4e-96 356.7 428 52.1
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.5e-95 352.8 458 51.5
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 5.9e-95 352.1 510 49.6
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.3e-93 346.3 428 50.7
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.0e-91 341.3 492 45.9
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.1e-88 329.3 460 49.8
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 7.8e-87 325.1 448 47.8
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 7.3e-85 318.5 419 49.2
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 9.5e-85 318.2 392 52.0
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 4.7e-84 315.8 200 81.0
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.1e-80 304.7 171 87.7
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 5.4e-80 302.4 400 48.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.6e-79 299.3 504 39.9
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.5e-77 293.5 483 42.7
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 4.7e-76 289.3 328 54.3
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.5e-74 284.3 484 46.3
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.0e-74 283.9 362 52.2
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.9e-72 277.3 308 54.9
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.4e-72 276.9 358 52.0
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.1e-72 276.2 177 78.0
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.0e-62 245.0 311 52.7
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.1e-61 241.5 482 39.0
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 4.9e-57 226.1 128 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 4.3e-53 213.0 377 39.8
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 6.2e-52 209.1 171 64.9
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 8.4e-41 172.2 418 35.6
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.6e-39 167.9 377 36.6
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.1e-38 162.9 157 52.2
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.0e-35 153.3 173 48.0
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.9e-33 147.1 310 36.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.5e-32 142.9 96 75.0
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.6e-28 131.3 206 37.4
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 3.1e-27 127.1 156 50.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 5.0e-25 119.8 65 90.8
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.9e-21 107.8 97 61.9
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.8e-19 101.3 379 30.3
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.8e-19 101.3 379 30.3
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 9.0e-19 99.0 110 51.8
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 9.0e-19 99.0 110 51.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.2e-18 98.6 116 50.9
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 7.2e-16 89.4 58 77.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.0e-14 85.5 173 35.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.1e-13 82.0 74 62.2
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.4e-11 75.1 90 45.6
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 3.0e-06 57.4 139 24.5
Mapoly0183s0015 Marchantia polymorpha HOM05D000230 ORTHO05D000176 3.9e-06 57.0 128 30.5
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 5.1e-06 56.6 126 31.0
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.1e-06 56.6 127 24.4
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 6.7e-06 56.2 127 24.4
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 6.7e-06 56.2 127 24.4
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 6.7e-06 56.2 119 28.6
BcaB02g06841 Brassica carinata HOM05D000230 ORTHO05D000176 6.7e-06 56.2 137 27.7
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 6.7e-06 56.2 127 24.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 6.7e-06 56.2 127 24.4
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 6.7e-06 56.2 127 24.4
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 6.7e-06 56.2 127 24.4
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 6.7e-06 56.2 119 28.6
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 6.7e-06 56.2 119 28.6
Hund21655 Selenicereus undatus HOM05D000230 ORTHO05D000176 6.7e-06 56.2 133 29.3
SEGI_09680 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 6.7e-06 56.2 150 28.7
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 8.8e-06 55.8 127 24.4


User provided reference genes

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