Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 6.1e-106 387.5 196 100.0
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 9.1e-94 347.1 196 91.8
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.0e-92 343.6 195 90.3
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.8e-88 327.0 196 85.7
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.8e-88 327.0 196 85.7
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.8e-87 325.5 196 84.2
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 2.3e-84 315.8 248 71.8
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.5e-83 313.2 230 73.0
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.7e-79 299.7 198 77.8
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.7e-77 292.4 228 69.7
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.0e-72 276.2 223 66.4
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.3e-71 273.5 196 71.9
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.4e-70 270.0 223 65.5
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 2.4e-70 269.2 198 68.2
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 6.0e-69 264.6 225 62.7
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.3e-68 262.7 195 67.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 3.0e-68 262.3 231 61.0
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 8.6e-68 260.8 205 66.3
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.9e-67 259.6 231 60.2
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.3e-67 258.5 196 67.3
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 7.3e-67 257.7 196 65.8
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.2e-66 256.9 228 59.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.6e-66 256.5 224 59.8
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.1e-66 256.1 228 59.6
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 6.2e-66 254.6 196 66.8
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.1e-65 253.8 197 67.0
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.1e-65 253.8 222 61.3
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.1e-65 253.8 196 70.9
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.1e-65 253.8 229 61.1
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.4e-65 253.4 199 66.8
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 5.2e-65 251.5 198 63.6
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 5.2e-65 251.5 196 66.3
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 8.9e-65 250.8 199 66.8
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.2e-64 250.4 197 66.0
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 1.2e-64 250.4 196 65.3
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 1.5e-64 250.0 197 67.5
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 2.6e-64 249.2 196 64.3
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.2e-63 246.1 198 66.2
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 4.9e-63 245.0 198 66.2
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 8.3e-63 244.2 199 64.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 8.3e-63 244.2 195 64.6
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.1e-62 243.8 200 61.5
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.1e-62 243.8 200 63.0
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.4e-62 243.4 198 62.1
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.9e-62 243.0 198 62.1
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 5.4e-62 241.5 189 64.6
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 7.1e-62 241.1 200 60.0
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 9.2e-62 240.7 198 63.6
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 9.2e-62 240.7 200 61.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.2e-61 240.4 199 62.8
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.2e-61 240.4 199 62.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.2e-61 240.4 198 64.1
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.1e-61 239.6 201 62.7
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.5e-61 238.8 198 63.1
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 7.8e-61 237.7 197 60.9
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 7.8e-61 237.7 197 60.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 7.8e-61 237.7 200 60.5
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.3e-60 236.9 196 61.2
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.7e-60 236.5 197 60.4
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.3e-60 236.1 196 61.2
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.3e-60 236.1 200 60.5
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.0e-60 235.7 197 60.4
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 3.0e-60 235.7 196 61.2
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 3.9e-60 235.3 198 62.1
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.9e-60 235.3 202 59.4
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.1e-60 235.0 198 62.1
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 8.6e-60 234.2 200 59.0
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-59 233.8 198 61.6
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.9e-59 233.0 200 61.0
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.9e-59 233.0 209 62.2
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.9e-59 233.0 187 68.4
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.5e-59 232.6 200 58.5
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.5e-59 232.6 198 61.6
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 3.3e-59 232.3 200 59.0
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 4.3e-59 231.9 196 60.7
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 5.6e-59 231.5 202 58.4
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 5.6e-59 231.5 202 58.4
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 7.3e-59 231.1 200 59.0
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 9.5e-59 230.7 191 60.2
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 9.5e-59 230.7 193 60.6
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.6e-58 229.9 200 58.0
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.6e-58 229.9 191 60.7
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.6e-58 229.9 198 60.6
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.6e-58 229.9 198 60.6
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 2.1e-58 229.6 196 60.2
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-58 229.2 191 60.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 2.8e-58 229.2 134 82.8
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 8.1e-58 227.6 200 61.0
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.1e-57 227.3 200 60.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.1e-57 227.3 196 59.7
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.8e-57 226.5 198 59.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 3.1e-57 225.7 200 56.0
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 5.2e-57 224.9 190 60.0
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 8.9e-57 224.2 193 58.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 8.9e-57 224.2 250 49.2
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.2e-56 223.8 198 55.6
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.5e-56 223.4 192 60.9
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 2.6e-56 222.6 201 55.7
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 4.4e-56 221.9 201 59.7
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 4.4e-56 221.9 190 60.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 7.6e-56 221.1 198 58.1
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.3e-55 220.3 193 58.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.9e-55 219.2 193 58.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.9e-55 219.2 194 58.2
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.4e-54 216.9 190 59.5
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.4e-54 216.9 193 60.1
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 5.4e-54 214.9 181 63.5
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.7e-52 209.9 265 46.4
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 2.3e-52 209.5 148 72.3
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 3.9e-52 208.8 169 65.1
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 5.1e-52 208.4 197 56.9
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 5.6e-51 204.9 194 53.6
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.6e-50 203.4 168 61.9
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.6e-50 203.4 193 53.9
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.2e-48 197.2 194 52.6
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.5e-48 196.8 181 59.1
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 3.5e-45 185.7 196 52.0
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 4.6e-45 185.3 189 48.1
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.0e-44 184.1 142 66.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.0e-44 184.1 196 52.0
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.3e-44 183.7 197 47.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 1.3e-44 183.7 197 47.7
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.9e-43 179.9 198 46.0
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.6e-42 176.8 148 60.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 3.6e-42 175.6 147 59.9
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 9.0e-41 171.0 153 56.9
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.6e-40 169.5 140 63.6
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 3.8e-39 165.6 196 42.9
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 2.4e-38 162.9 150 56.0
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 9.3e-38 161.0 144 58.3
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 9.3e-38 161.0 134 61.2
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.0e-36 157.5 112 67.0
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 2.3e-36 156.4 193 40.9
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 6.2e-34 148.3 189 47.1
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.3e-31 140.6 200 43.0
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.4e-31 138.3 113 61.9
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.9e-30 136.7 120 58.3
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.2e-30 136.0 196 43.9
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 2.7e-29 132.9 110 60.0
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 5.1e-28 128.6 171 46.2
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 6.7e-28 128.3 195 34.9
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 9.6e-27 124.4 118 51.7
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.8e-26 122.1 111 53.2
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.0e-23 114.4 113 54.0
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.8e-20 103.6 86 62.8
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.9e-20 102.4 55 90.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 6.7e-20 101.7 198 36.9
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 6.7e-20 101.7 113 52.2
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 8.7e-20 101.3 80 65.0
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.4e-17 93.2 203 32.0
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-16 90.1 49 87.8
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 5.9e-16 88.6 127 45.7
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.5e-15 85.1 57 71.9
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.1e-14 84.3 52 75.0
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.1e-14 84.3 203 26.6
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 9.1e-09 64.7 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 8.5e-07 58.2 158 26.6


User provided reference genes

Program Settings