Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 6.2e-97 357.5 181 100.0
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 2.1e-76 289.3 181 81.2
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.8e-72 276.2 183 79.2
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.8e-72 276.2 183 79.2
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 9.1e-72 273.9 182 79.7
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.6e-71 272.3 184 77.7
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.4e-69 266.5 184 77.7
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 1.9e-69 266.2 181 75.7
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 3.2e-69 265.4 181 75.7
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.6e-68 263.1 181 77.3
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.6e-68 263.1 181 74.0
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.1e-68 262.7 181 76.8
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.7e-68 262.3 181 74.0
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 3.6e-68 261.9 188 73.9
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 3.6e-68 261.9 181 74.6
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 6.1e-68 261.2 180 74.4
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 6.1e-68 261.2 180 74.4
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 1.8e-67 259.6 181 74.0
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 2.3e-67 259.2 181 74.0
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 3.0e-67 258.8 181 75.1
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 5.2e-67 258.1 181 75.1
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.7e-67 257.7 181 74.0
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.7e-67 257.7 181 74.0
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 8.8e-67 257.3 182 75.8
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 9.7e-66 253.8 181 72.9
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 2.2e-65 252.7 171 74.9
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 2.4e-64 249.2 181 72.4
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 2.4e-64 249.2 182 73.1
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.1e-64 248.8 181 72.4
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.1e-64 248.8 182 73.1
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 3.1e-64 248.8 181 72.4
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 4.1e-64 248.4 180 71.7
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 7.0e-64 247.7 181 74.0
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 2.0e-63 246.1 181 72.4
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 4.5e-63 245.0 181 70.7
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 5.9e-63 244.6 182 72.5
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 7.7e-63 244.2 182 70.9
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 7.7e-63 244.2 181 70.7
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.0e-62 243.8 184 70.7
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 1.3e-62 243.4 182 70.3
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.3e-62 243.4 190 72.6
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.7e-62 243.0 196 69.9
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 2.9e-62 242.3 181 70.2
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 8.5e-62 240.7 181 68.5
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 8.5e-62 240.7 184 70.7
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 8.5e-62 240.7 185 70.3
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.5e-61 240.0 181 68.5
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.9e-61 239.6 187 70.6
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 1.9e-61 239.6 186 71.5
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 4.2e-61 238.4 150 80.7
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 5.5e-61 238.0 186 72.0
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 7.2e-61 237.7 183 71.6
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 1.2e-60 236.9 182 70.9
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-60 236.5 189 70.9
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 1.6e-60 236.5 189 70.9
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.6e-60 236.5 180 70.0
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.6e-60 236.5 182 72.0
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 2.1e-60 236.1 184 68.5
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.1e-60 236.1 183 69.9
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 2.7e-60 235.7 187 70.1
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 2.7e-60 235.7 189 69.8
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.7e-60 235.7 188 71.3
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.7e-60 235.7 184 71.2
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 2.7e-60 235.7 182 69.2
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 3.6e-60 235.3 181 70.7
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.7e-60 235.0 171 70.8
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 6.1e-60 234.6 185 71.4
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 8.0e-60 234.2 171 70.2
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 8.0e-60 234.2 171 70.2
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 8.0e-60 234.2 184 70.1
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 8.0e-60 234.2 183 68.3
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.4e-59 233.4 180 68.3
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.4e-59 233.4 180 68.3
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.4e-59 233.4 180 68.3
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.8e-59 233.0 180 67.2
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 1.8e-59 233.0 170 70.6
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 1.8e-59 233.0 170 70.6
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.8e-59 233.0 160 73.8
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 3.0e-59 232.3 149 76.5
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 4.0e-59 231.9 184 66.8
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 4.0e-59 231.9 183 67.8
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 5.2e-59 231.5 164 72.6
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 5.2e-59 231.5 184 70.1
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 8.8e-59 230.7 187 66.8
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.2e-58 230.3 165 70.9
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.5e-58 229.9 172 70.9
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 2.0e-58 229.6 170 68.2
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 2.0e-58 229.6 183 67.2
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.3e-58 228.8 221 59.3
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 4.4e-58 228.4 126 88.9
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 9.7e-58 227.3 186 69.4
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.3e-57 226.9 159 72.3
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 1.3e-57 226.9 171 68.4
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 3.7e-57 225.3 181 67.4
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 6.3e-57 224.6 181 66.9
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.8e-56 223.0 186 69.9
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 2.4e-56 222.6 181 65.7
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.1e-56 222.2 158 69.6
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 4.1e-56 221.9 175 66.3
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.3e-56 221.5 172 68.0
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.5e-55 218.4 291 46.7
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 6.5e-54 214.5 291 46.0
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 8.5e-54 214.2 183 63.9
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.5e-53 213.4 184 65.8
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.5e-53 213.4 140 75.0
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.9e-53 213.0 184 65.2
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.9e-53 213.0 182 66.5
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 3.2e-53 212.2 184 63.0
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 2.7e-52 209.1 163 69.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.8e-51 206.5 190 61.6
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.2e-50 203.8 186 63.4
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.2e-50 203.8 185 60.5
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.6e-50 202.6 116 81.9
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 2.2e-49 199.5 214 58.9
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 1.1e-48 197.2 143 71.3
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 7.0e-48 194.5 145 69.0
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.0e-47 193.0 182 58.8
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 1.7e-46 189.9 183 60.1
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 1.7e-46 189.9 144 63.9
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.0e-46 188.3 163 63.2
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 9.5e-45 184.1 185 60.0
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 6.8e-43 177.9 170 58.8
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 7.8e-39 164.5 124 66.9
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 5.0e-38 161.8 87 93.1
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.9e-37 159.8 130 63.8
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 3.1e-35 152.5 157 52.9
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.3e-33 147.1 87 85.1
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-32 143.7 87 80.5
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.9e-32 143.3 82 89.0
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 4.1e-32 142.1 180 48.9
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 7.8e-31 137.9 82 84.1
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 3.0e-30 136.0 131 48.9
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 8.9e-27 124.4 100 58.0
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 9.8e-26 120.9 82 75.6
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 3.7e-25 119.0 87 72.4
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 3.9e-22 109.0 120 46.7
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 6.8e-19 98.2 99 57.6
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 4.4e-18 95.5 79 63.3
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-17 93.6 78 62.8
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-16 90.5 108 53.7
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 2.3e-14 83.2 54 74.1
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 3.9e-14 82.4 54 75.9
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 2.4e-11 73.2 98 48.0
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 1.2e-10 70.9 98 48.0
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 4.4e-10 68.9 98 48.0
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 8.4e-09 64.7 83 50.6
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.1e-08 64.3 69 40.6
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 2.4e-08 63.2 96 45.8


User provided reference genes

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