Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021013 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 9.4e-43 176.4 86 100.0
CSS0045372 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 5.0e-36 154.1 94 85.1
CSS0025057 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.1e-35 152.9 86 91.9
CSS0026956 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.9e-35 152.1 94 84.0
CSS0016023 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 4.2e-35 151.0 94 83.0
CSS0013633 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 5.5e-35 150.6 94 84.0
CSS0002739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D017237 1.4e-30 136.0 91 81.3
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 7.2e-11 70.5 64 67.2
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 7.2e-11 70.5 64 67.2
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 4.0e-09 64.7 64 59.4
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 4.0e-09 64.7 64 59.4
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 5.2e-09 64.3 64 59.4
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 6.8e-09 63.9 64 57.8
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 1.2e-08 63.2 64 56.2
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 1.5e-08 62.8 64 56.2
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 2.6e-08 62.0 64 56.2
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 2.6e-08 62.0 66 53.0
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 3.4e-08 61.6 64 57.8
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 4.4e-08 61.2 64 56.2
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 4.4e-08 61.2 66 53.0
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 5.7e-08 60.8 63 54.0
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 9.8e-08 60.1 66 51.5
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 9.8e-08 60.1 66 53.0
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 1.3e-07 59.7 64 53.1
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 1.7e-07 59.3 64 56.2
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 1.7e-07 59.3 64 53.1
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 2.2e-07 58.9 66 51.5
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 2.2e-07 58.9 64 53.1
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 2.2e-07 58.9 64 53.1
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 2.2e-07 58.9 64 53.1
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 2.8e-07 58.5 64 53.1
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 2.8e-07 58.5 64 53.1
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 2.8e-07 58.5 63 52.4
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 2.8e-07 58.5 63 54.0
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 3.7e-07 58.2 66 51.5
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 3.7e-07 58.2 64 50.0
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 4.9e-07 57.8 63 55.6
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 4.9e-07 57.8 64 51.6
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 8.3e-07 57.0 66 50.0
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 8.3e-07 57.0 66 50.0
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 8.3e-07 57.0 66 50.0
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 8.3e-07 57.0 64 54.7
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 8.3e-07 57.0 63 52.4
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 8.3e-07 57.0 64 51.6
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.4e-06 56.2 64 56.2
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 1.8e-06 55.8 64 50.0
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 2.4e-06 55.5 63 52.4
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 3.1e-06 55.1 56 48.2
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 3.1e-06 55.1 63 50.8
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 4.1e-06 54.7 67 50.7
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 4.1e-06 54.7 64 54.7
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 4.1e-06 54.7 64 48.4
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 5.4e-06 54.3 63 50.8
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 5.4e-06 54.3 63 50.8
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 5.4e-06 54.3 63 49.2
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 5.4e-06 54.3 64 46.9
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 5.4e-06 54.3 64 51.6
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 5.4e-06 54.3 55 49.1
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 7.0e-06 53.9 63 49.2
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 7.0e-06 53.9 63 50.8
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 7.0e-06 53.9 63 50.8
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 7.0e-06 53.9 64 50.0
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 9.2e-06 53.5 64 48.4
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 9.2e-06 53.5 63 52.4


User provided reference genes

Program Settings