Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 1.9e-99 365.9 192 100.0
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.5e-88 329.7 192 91.1
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 5.6e-88 327.8 188 89.4
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 5.6e-88 327.8 192 91.1
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 1.3e-87 326.6 192 90.1
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 1.3e-87 326.6 192 90.1
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 1.1e-86 323.6 192 87.5
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 1.1e-86 323.6 192 90.6
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-85 320.1 195 86.2
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 1.2e-85 320.1 195 86.2
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 2.2e-84 315.8 192 87.5
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 2.9e-84 315.5 192 88.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 4.9e-84 314.7 196 84.7
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 4.9e-84 314.7 192 86.5
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 2.4e-83 312.4 192 85.4
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 7.1e-83 310.8 192 85.9
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 9.3e-83 310.5 229 76.0
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-82 310.1 197 84.3
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 4.6e-82 308.1 193 86.5
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 1.0e-81 307.0 188 86.2
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 1.3e-81 306.6 194 84.0
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 5.1e-81 304.7 188 86.7
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.1e-81 304.7 192 85.4
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 2.5e-80 302.4 198 83.8
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.8e-78 296.2 192 83.9
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 4.0e-78 295.0 189 86.2
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 1.5e-77 293.1 182 86.3
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 5.1e-73 278.1 187 82.4
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 2.5e-72 275.8 192 78.1
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 7.6e-69 264.2 165 86.1
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 7.6e-69 264.2 165 86.1
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 7.6e-69 264.2 165 86.1
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 7.6e-69 264.2 165 86.1
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 7.6e-69 264.2 165 86.1
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.5e-68 261.2 192 75.5
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.5e-64 249.2 139 95.0
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.5e-64 249.2 139 95.0
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 1.0e-60 237.3 141 87.9
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 1.3e-60 236.9 157 82.2
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 7.2e-59 231.1 132 91.7
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 7.2e-59 231.1 132 92.4
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.0e-57 227.3 141 86.5
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 3.0e-57 225.7 144 85.4
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 3.3e-56 222.2 145 84.1
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.7e-56 221.5 139 84.9
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.7e-56 221.5 139 84.9
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 5.7e-56 221.5 139 84.9
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 3.7e-55 218.8 141 83.0
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.4e-54 216.1 129 89.1
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 9.1e-54 214.2 133 85.7
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 9.1e-54 214.2 132 87.1
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 1.2e-53 213.8 144 81.2
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 8.5e-52 207.6 121 90.9
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.1e-51 207.2 131 85.5
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 7.2e-51 204.5 128 85.9
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 6.1e-50 201.4 121 88.4
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.9e-49 198.7 152 74.3
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.1e-48 197.2 192 62.5
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 1.1e-48 197.2 130 79.2
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 2.0e-48 196.4 129 82.2
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 5.7e-48 194.9 118 86.4
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.3e-47 193.7 115 89.6
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 3.7e-47 192.2 118 87.3
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.1e-46 190.7 124 80.6
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 2.9e-44 182.6 148 70.3
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.8e-44 182.2 106 90.6
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-43 180.3 114 85.1
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 1.4e-43 180.3 116 83.6
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 1.4e-43 180.3 116 83.6
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 1.4e-43 180.3 116 83.6
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.0e-41 174.1 115 84.3
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.9e-41 172.2 199 55.8
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 6.7e-41 171.4 107 85.0
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.8e-41 171.0 128 73.4
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 7.4e-40 167.9 145 68.3
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.7e-40 167.5 139 69.8
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 1.7e-39 166.8 96 87.5
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 2.2e-39 166.4 105 83.8
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 1.8e-38 163.3 144 66.7
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 4.1e-38 162.2 116 79.3
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 1.6e-37 160.2 92 87.0
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.6e-37 160.2 164 61.6
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 2.0e-37 159.8 129 69.8
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.6e-37 159.5 95 90.5
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.6e-37 159.5 95 90.5
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 4.5e-37 158.7 90 90.0
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 3.2e-35 152.5 139 62.6
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 9.4e-35 151.0 116 74.1
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 1.2e-34 150.6 93 87.1
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 1.2e-34 150.6 132 63.6
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 1.2e-34 150.6 132 63.6
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 6.1e-34 148.3 94 83.0
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.1e-34 148.3 111 73.0
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 1.1e-30 137.5 90 82.2
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 1.5e-27 127.1 190 41.6
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 3.2e-27 125.9 73 89.0
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 8.0e-26 121.3 77 85.7
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-25 120.6 72 90.3
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-24 117.1 79 81.0
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.4e-24 115.5 78 80.8
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.7e-24 115.2 69 88.4
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 7.5e-24 114.8 68 88.2
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 8.3e-23 111.3 114 59.6
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 2.4e-22 109.8 65 87.7
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.1e-22 109.4 76 75.0
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 7.0e-22 108.2 74 82.4
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 9.1e-22 107.8 73 78.1
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.3e-20 104.0 69 78.3
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 1.7e-20 103.6 61 86.9
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 2.3e-20 103.2 57 86.0
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.8e-20 102.4 69 78.3
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 3.8e-20 102.4 61 83.6
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.6e-20 101.7 68 79.4
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.5e-19 99.8 53 88.7
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.5e-19 97.8 53 88.7
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 1.2e-18 97.4 54 87.0
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.2e-18 97.4 53 86.8
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 4.7e-18 95.5 56 83.9
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 4.7e-18 95.5 94 60.6
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.1e-18 95.1 53 88.7
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.0e-18 94.7 54 90.7
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 3.0e-17 92.8 57 87.7
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 5.2e-17 92.0 48 91.7
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 8.9e-17 91.3 71 73.2
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 8.3e-15 84.7 94 56.4
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.1e-14 84.3 58 77.6
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 5.4e-14 82.0 55 74.5
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 7.0e-14 81.6 76 61.8
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 2.7e-13 79.7 55 74.5
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 4.5e-13 79.0 64 65.6
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-12 77.4 61 70.5
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.3e-12 77.4 61 70.5
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.9e-11 73.6 41 85.4
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 7.3e-11 71.6 38 92.1
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 7.3e-11 71.6 38 92.1
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 1.8e-09 67.0 41 82.9
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 5.2e-09 65.5 83 50.6
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 1.5e-08 63.9 41 82.9
SEGI_17353 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 5.4e-06 55.5 47 61.7


User provided reference genes

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