Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.9e-166 588.6 320 100.0
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.3e-48 196.1 283 45.9
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 5.2e-46 189.1 280 45.0
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.0e-42 177.2 289 45.0
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 3.1e-38 163.3 275 44.0
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 6.8e-38 162.2 284 41.2
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.9e-36 156.0 280 41.8
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.2e-35 153.3 236 41.5
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.1e-35 152.9 233 42.5
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.4e-35 152.5 272 44.5
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 7.0e-35 152.1 220 42.7
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 4.3e-32 142.9 279 38.0
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 4.3e-32 142.9 282 38.7
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 3.6e-31 139.8 240 38.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.3e-30 137.1 248 38.7
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 3.1e-30 136.7 272 34.9
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 5.2e-30 136.0 222 40.5
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.2e-29 134.8 296 34.1
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 9.9e-29 131.7 271 33.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 4.9e-28 129.4 234 38.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.4e-28 129.0 214 38.3
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.3e-28 128.6 239 37.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-27 127.9 217 37.8
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.9e-27 127.5 218 39.0
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.4e-27 127.1 236 37.3
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.4e-27 127.1 279 33.0
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.4e-27 127.1 239 35.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 3.2e-27 126.7 275 32.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 3.2e-27 126.7 218 38.1
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 3.2e-27 126.7 216 36.1
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.2e-27 126.7 239 36.0
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 5.4e-27 125.9 228 36.8
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 7.1e-27 125.6 218 38.1
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 2.1e-26 124.0 218 37.6
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.7e-26 123.6 274 34.7
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 4.6e-26 122.9 239 36.8
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.0e-26 122.5 241 36.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 6.0e-26 122.5 216 37.5
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 7.8e-26 122.1 239 35.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 7.8e-26 122.1 233 37.3
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 7.8e-26 122.1 233 39.1
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 7.8e-26 122.1 232 36.2
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.0e-25 121.7 238 34.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.0e-25 121.7 211 38.9
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.3e-25 121.3 219 37.4
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.7e-25 120.9 238 34.5
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.7e-25 120.9 218 37.6
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.7e-25 120.9 218 37.2
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.3e-25 120.6 280 34.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.3e-25 120.6 218 37.2
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.3e-25 120.6 275 35.6
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.9e-25 119.8 197 40.6
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 3.9e-25 119.8 222 37.8
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 5.1e-25 119.4 218 37.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.1e-25 119.4 256 35.9
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 8.6e-25 118.6 234 37.6
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-24 118.2 223 38.1
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.5e-24 117.9 228 34.2
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.9e-24 117.5 218 37.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.9e-24 117.5 241 35.7
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.9e-24 117.5 234 37.2
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.3e-24 116.7 218 38.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.3e-24 116.7 289 32.2
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 5.6e-24 115.9 243 34.2
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 9.5e-24 115.2 241 35.3
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.6e-23 114.4 275 32.4
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.6e-23 114.4 238 31.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.7e-23 112.8 222 33.8
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.1e-23 112.1 228 35.1
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-22 111.7 228 35.1
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.1e-22 111.7 276 33.7
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.4e-22 111.3 238 33.6
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.4e-22 111.3 213 36.2
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.4e-22 110.5 218 35.3
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.4e-22 110.5 74 71.6
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.1e-22 110.2 218 36.7
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 5.2e-22 109.4 241 34.0
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 5.2e-22 109.4 225 34.7
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-21 107.8 218 35.8
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.0e-21 107.5 239 32.2
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.6e-21 107.1 218 35.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.4e-21 106.7 237 32.9
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 7.6e-21 105.5 127 48.8
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 9.9e-21 105.1 71 74.6
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-20 104.8 235 32.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.4e-19 101.3 286 29.7
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 3.2e-19 100.1 243 32.1
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 5.4e-19 99.4 213 31.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 5.4e-19 99.4 220 35.0
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 5.4e-19 99.4 220 35.0
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 9.2e-19 98.6 240 33.3
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.7e-18 97.1 301 28.6
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 7.8e-18 95.5 216 30.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.7e-17 94.4 214 31.3
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 3.0e-17 93.6 220 29.1
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 3.9e-17 93.2 241 28.6
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.9e-17 93.2 237 29.1
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 6.6e-17 92.4 272 29.8
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.1e-16 91.7 94 55.3
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.5e-16 91.3 241 28.2
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.5e-16 91.3 238 28.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.5e-16 91.3 210 31.0
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.5e-16 90.5 218 33.5
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.3e-16 90.1 282 29.4
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.3e-16 90.1 234 29.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.3e-16 89.7 218 33.5
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 7.3e-16 89.0 230 28.3
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.7e-15 86.3 148 41.2
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.1e-14 85.1 238 28.6
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.1e-14 85.1 222 25.2
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.4e-14 84.0 69 56.5
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.4e-14 84.0 223 27.4
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.4e-14 84.0 223 27.4
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 3.1e-14 83.6 219 29.2
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.0e-14 83.2 234 27.4
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 4.0e-14 83.2 234 26.9
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.5e-13 81.3 236 28.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 4.4e-13 79.7 223 31.4
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.9e-12 77.0 95 50.5
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 4.9e-12 76.3 53 73.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-11 75.1 224 27.2
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.1e-11 75.1 241 27.0
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.2e-11 73.6 220 29.5
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 5.4e-11 72.8 113 38.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.1e-10 70.9 88 43.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 6.0e-10 69.3 53 64.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 6.0e-10 69.3 222 27.9
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.0e-10 69.3 222 27.9
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.8e-10 68.9 222 27.5
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.3e-09 67.4 49 65.3
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.0e-09 67.0 56 57.1
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.9e-09 66.6 92 39.1
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.9e-09 66.6 59 55.9
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.7e-09 65.5 222 27.0
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 1.5e-08 64.7 90 42.2
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.1e-07 60.8 238 25.2
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 1.1e-06 58.5 77 44.2
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 1.1e-06 58.5 77 44.2
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 3.1e-06 57.0 53 52.8
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.3e-06 56.2 110 32.7


User provided reference genes

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