Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 9.6e-107 390.2 199 100.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.5e-85 318.5 196 82.7
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.7e-84 314.3 196 81.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.0e-81 305.1 196 79.6
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 3.7e-74 282.0 196 71.9
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.9e-70 269.6 191 70.7
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 6.1e-69 264.6 192 66.1
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.0e-68 263.8 194 68.6
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.3e-68 263.5 196 67.9
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.1e-65 252.3 188 68.6
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.5e-64 250.0 194 62.4
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.4e-64 248.8 191 63.9
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.9e-63 245.7 188 64.4
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 5.0e-63 245.0 191 62.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.1e-62 243.8 197 63.5
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 3.2e-62 242.3 192 64.6
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.5e-62 241.5 196 60.2
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.2e-62 241.1 196 60.7
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 9.4e-62 240.7 194 61.3
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 9.4e-62 240.7 189 62.4
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.2e-61 240.4 197 61.9
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.7e-61 239.2 193 61.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.7e-61 239.2 193 60.1
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.6e-61 238.8 199 57.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 4.6e-61 238.4 197 62.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 4.6e-61 238.4 195 60.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 7.9e-61 237.7 193 61.7
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 7.9e-61 237.7 188 61.2
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-60 237.3 199 61.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.4e-60 236.9 188 61.7
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.8e-60 236.5 200 60.0
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.3e-60 236.1 193 61.1
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.0e-60 235.7 197 59.4
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.1e-60 235.0 201 58.7
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.8e-60 234.2 187 61.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.1e-59 233.8 190 58.9
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-59 233.8 194 59.3
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.5e-59 233.4 185 62.2
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.5e-59 233.4 191 61.3
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.5e-59 233.4 194 61.9
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.5e-59 233.4 188 60.6
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.5e-59 233.4 199 60.3
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.0e-59 233.0 201 57.7
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.0e-59 233.0 193 60.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 3.3e-59 232.3 193 61.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 3.3e-59 232.3 191 59.7
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 7.4e-59 231.1 193 59.1
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.3e-58 230.3 193 59.1
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 2.2e-58 229.6 192 58.3
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.8e-58 229.2 193 59.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 2.8e-58 229.2 193 59.1
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.8e-58 229.2 197 59.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-58 228.8 191 59.2
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 4.8e-58 228.4 198 55.6
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 4.8e-58 228.4 194 61.9
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 8.2e-58 227.6 193 54.4
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 8.2e-58 227.6 197 57.4
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.1e-57 227.3 193 57.5
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-57 226.9 187 61.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.1e-57 225.3 193 54.4
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 4.1e-57 225.3 190 58.9
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.1e-57 225.3 190 57.9
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 6.9e-57 224.6 189 55.0
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 9.1e-57 224.2 196 59.7
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 9.1e-57 224.2 194 58.2
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 9.1e-57 224.2 197 55.8
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.2e-56 223.8 195 59.0
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.5e-56 221.9 198 55.6
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 5.9e-56 221.5 192 58.3
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 7.7e-56 221.1 188 59.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.3e-55 220.3 193 57.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.7e-55 219.9 193 60.1
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.7e-55 219.9 193 57.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 6.5e-55 218.0 192 57.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 8.5e-55 217.6 193 54.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 8.5e-55 217.6 194 56.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 8.5e-55 217.6 192 55.7
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.9e-54 216.5 242 48.8
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-54 216.5 187 57.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.2e-54 215.7 189 55.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 3.2e-54 215.7 193 54.9
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 7.2e-54 214.5 189 55.0
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 7.2e-54 214.5 188 56.4
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 9.4e-54 214.2 191 57.1
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-53 213.8 187 57.8
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.2e-53 213.8 193 57.0
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 54.9
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.7e-53 212.6 198 54.0
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.7e-53 212.6 198 54.5
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 4.7e-53 211.8 187 56.1
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 4.7e-53 211.8 181 58.0
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.1e-53 211.5 194 55.7
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 7.9e-53 211.1 198 53.5
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 7.9e-53 211.1 194 54.1
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-52 209.9 188 55.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.3e-52 209.5 194 54.6
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.9e-52 208.8 187 55.6
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.1e-51 207.2 191 52.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.1e-51 207.2 190 54.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.3e-51 205.7 191 56.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 4.4e-51 205.3 187 55.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.4e-51 205.3 190 54.7
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 5.7e-51 204.9 193 52.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 9.7e-51 204.1 146 65.8
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.3e-50 203.8 170 60.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.7e-50 203.4 190 54.2
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.8e-50 202.6 198 52.5
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.8e-50 201.8 188 52.7
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.8e-50 201.8 192 53.1
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 6.3e-50 201.4 194 51.5
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 8.2e-50 201.1 199 51.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 8.2e-50 201.1 190 53.2
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 8.2e-50 201.1 188 54.8
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.1e-49 200.7 191 51.8
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-49 200.7 187 55.1
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.4e-49 200.3 193 52.8
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 3.1e-49 199.1 191 51.8
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 4.1e-49 198.7 193 52.8
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 9.1e-49 197.6 193 49.2
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.6e-48 196.8 192 51.6
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.6e-48 196.1 190 50.5
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.6e-48 196.1 194 52.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.5e-48 195.7 193 48.7
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.5e-48 195.7 193 49.7
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.7e-48 194.5 175 56.6
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.3e-47 193.7 179 53.6
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.3e-47 193.7 174 57.5
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.8e-47 192.2 193 48.2
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 5.0e-47 191.8 193 48.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.5e-46 190.3 191 49.7
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.2e-46 188.7 191 51.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 9.4e-46 187.6 192 52.6
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 9.4e-46 187.6 167 56.9
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.2e-45 187.2 190 52.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.6e-45 186.8 199 48.7
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.7e-44 181.4 187 48.7
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.8e-42 175.3 190 47.4
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.1e-41 174.1 188 45.7
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.8e-41 173.3 166 51.8
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.4e-41 172.9 194 46.9
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 3.1e-41 172.6 165 53.9
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 5.3e-41 171.8 164 56.7
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 2.7e-40 169.5 193 44.6
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.7e-40 169.5 128 64.1
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 2.7e-40 169.5 187 44.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.1e-38 164.1 138 55.8
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 7.2e-38 161.4 194 48.5
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.6e-37 160.2 145 53.8
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 2.1e-37 159.8 188 45.2
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.6e-37 159.1 193 44.6
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.0e-36 155.6 193 42.5
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.8e-36 154.5 193 42.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.5e-35 151.4 159 49.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.7e-34 150.2 193 40.9
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.7e-34 149.1 165 48.5
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 6.3e-34 148.3 193 40.9
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.1e-33 145.6 158 51.3
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 2.7e-32 142.9 126 54.0
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.7e-32 142.9 154 46.8
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.5e-32 142.5 128 52.3
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.9e-31 139.4 194 40.2
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.5e-30 137.1 193 40.4
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 3.4e-27 125.9 109 56.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.9e-22 110.2 114 51.8
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.5e-22 107.8 198 34.3
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.0e-20 102.8 199 38.7
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-19 100.9 194 34.5
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 4.9e-18 95.5 83 56.6
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.4e-17 94.0 102 51.0
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-14 82.8 165 33.3
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 3.6e-13 79.3 94 42.6
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 3.6e-13 79.3 192 31.2
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 4.7e-13 79.0 228 27.2
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 4.0e-12 75.9 177 31.6
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 6.4e-10 68.6 78 41.0
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.1e-09 67.8 160 31.2


User provided reference genes

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