Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020734 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 1.7e-71 272.7 150 100.0
CSS0044228 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 9.0e-41 170.6 103 92.2
CSS0035942 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D008248 1.2e-40 170.2 104 84.6
CSS0031692 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 6.4e-39 164.5 104 90.4
Hma1.2p1_0112F.1_g054935 Hydrangea macrophylla HOM05D000032 ORTHO05D008248 1.2e-21 107.1 100 56.0
Rhsim09G0043500 Rhododendron simsii HOM05D000032 ORTHO05D008248 3.5e-21 105.5 75 70.7
Dinv29787 Davidia involucrata HOM05D000032 ORTHO05D008248 3.9e-20 102.1 76 68.4
vmacro00534 Vaccinium macrocarpon HOM05D000032 ORTHO05D008248 1.1e-19 100.5 75 68.0
Lj3C638G9 Lonicera japonica HOM05D000032 ORTHO05D008248 1.3e-18 97.1 77 66.2
Nitab4.5_0003474g0040 Nicotiana tabacum HOM05D000032 ORTHO05D008248 7.6e-16 87.8 102 51.0
CANSAT78G0248 Cannabis sativa HOM05D000032 ORTHO05D008248 1.7e-15 86.7 74 63.5
Nitab4.5_0002937g0050 Nicotiana tabacum HOM05D000032 ORTHO05D008248 2.2e-15 86.3 102 50.0
Sabra10G0043300 Salix brachista HOM05D000032 ORTHO05D008248 2.9e-15 85.9 76 64.5
Atru.chr4.1879 Acer truncatum HOM05D000032 ORTHO05D008248 5.0e-15 85.1 78 53.8
TAR365G0107 Trochodendron aralioides HOM05D000032 ORTHO05D008248 5.0e-15 85.1 85 51.8
Glyma.07G074800 Glycine max HOM05D000032 ORTHO05D008248 6.5e-15 84.7 76 55.3
GSVIVG01027957001 Vitis vinifera HOM05D000032 ORTHO05D008248 1.1e-14 84.0 72 61.1
Potri.010G063600 Populus trichocarpa HOM05D000032 ORTHO05D008248 2.5e-14 82.8 80 58.8
Cc03_g06800 Coffea canephora HOM05D000032 ORTHO05D008248 3.2e-14 82.4 75 56.0
Oeu023144.1 Olea europaea HOM05D000032 ORTHO05D008248 5.5e-14 81.6 80 60.0
Actinidia32966 Actinidia chinensis HOM05D000032 ORTHO05D008248 9.3e-14 80.9 50 76.0
TPR.G9295 Trifolium pratense HOM05D000032 ORTHO05D008248 9.3e-14 80.9 79 58.2
Lalb_Chr10g0097291 Lupinus albus HOM05D000032 ORTHO05D008248 2.1e-13 79.7 78 59.0
Phvul.010G094600 Phaseolus vulgaris HOM05D000032 ORTHO05D008248 2.1e-13 79.7 79 53.2
Ca_03626_v3 Cicer arietinum L. HOM05D000032 ORTHO05D008248 2.7e-13 79.3 78 53.8
Medtr7g057250 Medicago truncatula HOM05D000032 ORTHO05D008248 2.7e-13 79.3 81 51.9
Ciclev10004340m.g Citrus clementina HOM05D000032 ORTHO05D008248 4.6e-13 78.6 72 56.9
VMungo0331G1285 Vigna mungo HOM05D000032 ORTHO05D008248 7.9e-13 77.8 77 53.2
Cfa014812 Carpinus fangiana HOM05D000032 ORTHO05D008248 1.0e-12 77.4 74 59.5
TWI73G0114 Tripterygium wilfordii HOM05D000032 ORTHO05D008248 1.0e-12 77.4 76 52.6
Duzib151G1189 Durio zibethinus HOM05D000032 ORTHO05D008248 1.4e-12 77.0 89 47.2
Lsat_1_v5_gn_2_42041 Lactuca sativa HOM05D000032 ORTHO05D008248 2.3e-12 76.3 84 53.6
Haze_11492 Corylus avellana HOM05D000032 ORTHO05D008248 5.1e-12 75.1 74 58.1
Prupe.5G037600 Prunus persica HOM05D000032 ORTHO05D008248 5.1e-12 75.1 75 53.3
CiPaw.01G175600 Carya illinoinensis HOM05D000032 ORTHO05D008248 6.7e-12 74.7 75 56.0
CAN.G812.30 Capsicum annuum HOM05D000032 ORTHO05D008248 8.8e-12 74.3 75 52.0
SGA_v2.0_scaffold86G26859 Striga asiatica HOM05D000032 ORTHO05D008248 8.8e-12 74.3 84 51.2
Peaxi162Scf00125g01324 Petunia axillaris HOM05D000032 ORTHO05D008248 1.1e-11 73.9 81 50.6
Psat3g146960 Pisum sativum HOM05D000032 ORTHO05D008248 1.1e-11 73.9 83 48.2
MD12G1094500 Malus domestica HOM05D000032 ORTHO05D008248 1.5e-11 73.6 75 52.0
Sopen09g033680 Solanum pennellii HOM05D000032 ORTHO05D008248 1.9e-11 73.2 104 46.2
Migut.G00589 Erythranthe guttata HOM05D000032 ORTHO05D008248 2.5e-11 72.8 84 50.0
Manes.15G047300 Manihot esculenta HOM05D000032 ORTHO05D008248 2.5e-11 72.8 106 45.3
Nn1g03022 Nelumbo nucifera HOM05D000032 ORTHO05D008248 2.5e-11 72.8 77 53.2
DCAR_024298 Daucus carota HOM05D000032 ORTHO05D008248 4.3e-11 72.0 74 56.8
Ah.04g153530 Amaranthus hybridus HOM05D000032 ORTHO05D008248 5.7e-11 71.6 71 57.7
ClCG06G007360 Citrullus lanatus HOM05D000032 ORTHO05D024695 5.7e-11 71.6 76 52.6
SalBow2G1692 Salvia bowleyana HOM05D000032 ORTHO05D008248 5.7e-11 71.6 84 53.6
PGSC0003DMG400001506 Solanum tuberosum HOM05D000032 ORTHO05D008248 5.7e-11 71.6 70 55.7
Thecc.04G268600 Theobroma cacao HOM05D000032 ORTHO05D008248 5.7e-11 71.6 65 53.8
Solyc09g090740.4 Solanum lycopersicum HOM05D000032 ORTHO05D008248 7.4e-11 71.2 70 55.7
Gorai.006G254000 Gossypium raimondii HOM05D000032 ORTHO05D008248 9.7e-11 70.9 84 46.4
Lj3g0023133 Lotus japonicus HOM05D000032 ORTHO05D008248 9.7e-11 70.9 80 45.0
MD14G1084300 Malus domestica HOM05D000032 ORTHO05D008248 9.7e-11 70.9 74 47.3
Cpa.g.sc59.33 Carica papaya HOM05D000032 ORTHO05D024695 1.3e-10 70.5 76 53.9
Gohir.D09G231300 Gossypium hirsutum HOM05D000032 ORTHO05D008248 1.7e-10 70.1 64 56.2
ECA232G3455 Erigeron canadensis HOM05D000032 ORTHO05D008248 2.2e-10 69.7 67 55.2
ECA232G1204 Erigeron canadensis HOM05D000032 ORTHO05D008248 4.8e-10 68.6 67 53.7
Gohir.A09G230200 Gossypium hirsutum HOM05D000032 ORTHO05D008248 4.8e-10 68.6 65 55.4
MELO3C023052.2 Cucumis melo HOM05D000032 ORTHO05D008248 6.3e-10 68.2 78 52.6
arahy.Tifrunner.gnm1.ann1.W310LH Arachis hypogaea HOM05D000032 ORTHO05D008248 8.2e-10 67.8 70 51.4
Sed0024548 Sechium edule HOM05D000032 ORTHO05D008248 8.2e-10 67.8 71 53.5
EL10Ac3g06715 Beta vulgaris HOM05D000032 ORTHO05D008248 1.1e-09 67.4 62 59.7
COL.COLO4_15998 Corchorus olitorius HOM05D000032 ORTHO05D008248 2.4e-09 66.2 65 52.3
CsaV3_2G012320 Cucumis sativus L. HOM05D000032 ORTHO05D008248 2.4e-09 66.2 77 50.6
Eucgr.H02888 Eucalyptus grandis HOM05D000032 ORTHO05D008248 4.1e-09 65.5 107 41.1
PGR142G3130 Punica granatum HOM05D000032 ORTHO05D008248 5.3e-09 65.1 78 56.4
arahy.Tifrunner.gnm1.ann1.15AJKM Arachis hypogaea HOM05D000032 ORTHO05D008248 6.9e-09 64.7 69 49.3
THA.LOC104802593 Tarenaya hassleriana HOM05D000032 ORTHO05D008248 2.6e-08 62.8 79 45.6
CARHR092100 Cardamine hirsuta HOM05D000032 ORTHO05D008248 3.4e-08 62.4 75 50.7
MBI10_g26047_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D008248 5.9e-08 61.6 64 56.2
PSO339G1682 Papaver somniferum HOM05D000032 ORTHO05D008248 5.9e-08 61.6 83 42.2
Sc13g0003050 Simmondsia chinensis HOM05D000032 ORTHO05D008248 7.7e-08 61.2 66 59.1
Psat3g117880 Pisum sativum HOM05D000032 ORTHO05D008248 1.0e-07 60.8 43 65.1
RcHm_v2.0_Chr3g0492441 Rosa chinensis HOM05D000032 ORTHO05D008248 2.2e-07 59.7 73 52.1
Hund20473 Selenicereus undatus HOM05D000032 ORTHO05D008248 2.9e-07 59.3 60 50.0
unitig_899.g14854 Utricularia gibba HOM05D000032 ORTHO05D008248 3.8e-07 58.9 60 51.7
AT3G16840 Arabidopsis thaliana HOM05D000032 ORTHO05D008248 5.0e-07 58.5 74 47.3
FAN28G1398 Fragaria x ananassa HOM05D000032 ORTHO05D008248 5.0e-07 58.5 73 47.9
Carub.0003s1655 Capsella rubella HOM05D000032 ORTHO05D008248 8.5e-07 57.8 75 46.7
FAN23G0160 Fragaria x ananassa HOM05D000032 ORTHO05D008248 8.5e-07 57.8 73 46.6
Aqoxy5G00104 Aquilegia oxysepala HOM05D000032 ORTHO05D008248 1.1e-06 57.4 66 48.5
Sp3g15080 Schrenkiella parvula HOM05D000032 ORTHO05D008248 1.1e-06 57.4 66 48.5
HanXRQChr14g0434201 Helianthus annuus HOM05D000032 ORTHO05D008248 2.5e-06 56.2 104 39.4
AL3G29800 Arabidopsis lyrata HOM05D000032 ORTHO05D008248 3.2e-06 55.8 75 44.0
BcaB04g20873 Brassica carinata HOM05D000032 ORTHO05D008248 4.2e-06 55.5 81 43.2
CARHR247950 Cardamine hirsuta HOM05D000032 ORTHO05D008248 7.2e-06 54.7 75 42.7


User provided reference genes

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