Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.1e-28 127.5 54 100.0
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.2e-19 99.0 66 71.2
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.1e-12 75.9 60 61.7
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 4.1e-12 73.9 40 72.5
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 9.2e-12 72.8 40 72.5
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.2e-11 72.4 40 72.5
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.2e-11 72.4 40 72.5
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.2e-11 72.4 40 75.0
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.6e-11 72.0 40 72.5
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.6e-11 72.0 40 72.5
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 1.6e-11 72.0 40 72.5
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.0e-11 71.6 35 77.1
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 2.0e-11 71.6 35 82.9
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.0e-11 71.6 35 82.9
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 2.0e-11 71.6 40 72.5
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.0e-11 71.6 44 70.5
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 2.7e-11 71.2 37 78.4
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 2.7e-11 71.2 44 68.2
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 2.7e-11 71.2 40 72.5
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.5e-11 70.9 35 80.0
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 3.5e-11 70.9 35 80.0
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 3.5e-11 70.9 35 80.0
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.5e-11 70.9 35 80.0
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 3.5e-11 70.9 35 80.0
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 3.5e-11 70.9 40 72.5
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 4.5e-11 70.5 40 70.0
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 5.9e-11 70.1 44 68.2
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 5.9e-11 70.1 40 70.0
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 5.9e-11 70.1 35 80.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 5.9e-11 70.1 35 80.0
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 5.9e-11 70.1 35 80.0
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.9e-11 70.1 40 70.0
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.9e-11 70.1 40 70.0
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 5.9e-11 70.1 35 80.0
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.9e-11 70.1 40 70.0
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 5.9e-11 70.1 40 70.0
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 5.9e-11 70.1 35 80.0
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 7.8e-11 69.7 40 67.5
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 7.8e-11 69.7 40 70.0
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 7.8e-11 69.7 40 70.0
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 7.8e-11 69.7 40 70.0
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 7.8e-11 69.7 40 70.0
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 7.8e-11 69.7 40 70.0
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 7.8e-11 69.7 40 70.0
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 70.0
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 70.0
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 70.0
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 70.0
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 70.0
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.0e-10 69.3 40 67.5
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 1.3e-10 68.9 35 74.3
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 70.0
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 67.5
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.3e-10 68.9 40 67.5
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.7e-10 68.6 35 74.3
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 1.7e-10 68.6 40 67.5
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.7e-10 68.6 40 67.5
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.3e-10 68.2 40 65.0
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.3e-10 68.2 40 70.0
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.3e-10 68.2 40 67.5
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 2.3e-10 68.2 40 65.0
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 2.9e-10 67.8 40 65.0
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.9e-10 67.8 35 74.3
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.9e-10 67.8 35 77.1
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 3.9e-10 67.4 35 71.4
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 5.0e-10 67.0 35 74.3
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 5.0e-10 67.0 35 77.1
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 6.6e-10 66.6 35 74.3
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.5e-09 65.5 35 71.4
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.9e-09 65.1 35 65.7
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.9e-09 65.1 35 71.4
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.5e-09 64.7 35 65.7
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 2.5e-09 64.7 35 68.6
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 3.3e-09 64.3 40 62.5
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 4.3e-09 63.9 42 64.3
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.4e-07 58.9 35 71.4
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.9e-07 56.2 67 44.8


User provided reference genes

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