Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.7e-84 315.8 152 100.0
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.2e-72 276.6 179 79.3
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.2e-70 268.1 179 77.1
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.2e-55 219.2 177 63.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 8.8e-52 207.2 179 59.8
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 2.0e-51 206.1 178 59.6
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 2.2e-50 202.6 179 59.8
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 5.3e-49 198.0 180 57.2
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 7.2e-46 187.6 179 56.4
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 3.6e-45 185.3 179 55.3
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.7e-39 166.4 178 51.1
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 8.5e-39 164.1 179 52.5
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 1.5e-38 163.3 179 48.0
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.5e-38 162.5 179 48.6
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.2e-38 161.8 180 46.7
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.2e-38 161.8 181 46.4
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 5.5e-38 161.4 181 45.9
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 1.6e-37 159.8 180 47.2
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.7e-37 159.1 181 45.3
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.7e-37 159.1 181 45.3
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.0e-36 157.1 180 46.1
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.4e-36 156.8 180 45.0
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.4e-36 156.8 187 47.1
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.8e-36 156.4 179 46.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.8e-36 156.4 176 48.9
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.3e-36 156.0 180 50.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.3e-36 156.0 182 47.8
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 4.0e-36 155.2 185 48.1
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 8.8e-36 154.1 180 46.7
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.2e-35 153.7 176 47.2
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.5e-35 153.3 181 45.9
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 2.6e-35 152.5 181 46.4
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 3.3e-35 152.1 181 46.4
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 5.7e-35 151.4 177 46.9
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 5.7e-35 151.4 180 43.9
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 7.5e-35 151.0 181 45.3
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.3e-34 150.2 179 45.3
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.3e-34 150.2 181 47.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.7e-34 149.8 180 45.0
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.2e-34 149.4 162 51.9
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 2.8e-34 149.1 179 42.5
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.8e-34 149.1 179 45.3
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 3.7e-34 148.7 181 44.8
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.3e-34 147.9 181 45.9
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 6.3e-34 147.9 186 41.9
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 8.2e-34 147.5 173 47.4
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 8.2e-34 147.5 180 46.7
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.1e-33 147.1 178 46.6
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.8e-33 146.4 181 47.0
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 5.3e-33 144.8 179 43.6
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.2e-32 143.7 166 47.0
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.6e-32 143.3 179 44.1
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 4.5e-32 141.7 179 42.5
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 5.9e-32 141.4 181 40.9
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 5.9e-32 141.4 181 43.1
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 5.9e-32 141.4 181 41.4
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.0e-31 140.6 181 41.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.0e-31 140.6 179 43.6
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.7e-31 139.8 173 45.7
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.7e-31 139.8 170 45.3
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.2e-31 139.4 166 48.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.2e-31 139.4 177 45.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.2e-31 139.4 177 45.2
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.9e-31 139.0 181 43.1
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.9e-31 139.0 181 43.1
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.8e-31 138.7 179 44.1
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 5.0e-31 138.3 179 42.5
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 5.0e-31 138.3 181 43.1
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 6.5e-31 137.9 181 43.6
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.1e-30 137.1 181 43.6
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 1.5e-30 136.7 179 44.1
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.9e-30 136.3 184 43.5
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 1.9e-30 136.3 179 41.3
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.5e-30 136.0 199 39.7
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.5e-30 136.0 179 41.9
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.2e-30 135.6 181 40.9
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.2e-30 135.6 179 42.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 5.5e-30 134.8 179 41.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 5.5e-30 134.8 178 41.0
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.2e-30 134.4 177 42.4
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 7.2e-30 134.4 179 42.5
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.2e-29 133.7 179 41.9
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.1e-29 132.9 181 43.1
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 2.1e-29 132.9 179 40.2
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.7e-29 132.5 180 42.2
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.7e-29 132.5 181 42.5
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.0e-28 130.6 181 42.5
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 3.0e-28 129.0 179 40.2
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.0e-28 129.0 181 40.3
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.0e-28 128.6 180 40.6
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.2e-28 128.3 179 39.7
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 8.8e-28 127.5 180 42.2
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 8.8e-28 127.5 178 38.8
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.2e-27 127.1 181 39.2
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.5e-27 126.7 185 41.1
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 3.4e-27 125.6 176 38.6
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.4e-27 125.2 179 39.7
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.4e-27 125.2 178 38.2
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.4e-27 125.2 178 38.2
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.4e-27 125.2 178 38.2
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 5.7e-27 124.8 188 41.5
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.3e-26 123.6 179 39.1
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-26 123.2 180 40.0
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.7e-26 123.2 180 40.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.7e-26 123.2 179 38.5
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.2e-26 122.9 183 36.6
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 2.2e-26 122.9 180 38.3
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.8e-26 122.5 180 39.4
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 2.8e-26 122.5 166 44.6
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 2.8e-26 122.5 164 42.7
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.8e-26 122.5 171 39.8
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 4.8e-26 121.7 180 39.4
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 4.8e-26 121.7 180 39.4
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.4e-25 120.2 180 38.3
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.8e-25 119.8 178 37.6
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.1e-25 119.0 174 39.1
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 4.1e-25 118.6 179 36.9
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.1e-25 118.6 180 38.9
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 7.0e-25 117.9 177 37.3
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.0e-25 117.9 162 41.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 9.1e-25 117.5 164 39.6
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.0e-24 116.3 179 40.2
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 7.7e-24 114.4 185 37.8
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 7.7e-24 114.4 167 39.5
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 7.7e-24 114.4 164 40.2
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.0e-23 114.0 128 46.1
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.9e-23 112.5 129 46.5
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 3.8e-23 112.1 203 36.9
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 5.0e-23 111.7 164 38.4
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 5.0e-23 111.7 118 48.3
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 8.5e-23 110.9 165 37.0
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.5e-23 110.9 129 46.5
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 1.9e-22 109.8 141 43.3
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.5e-22 109.4 166 36.7
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 7.2e-22 107.8 184 37.0
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 9.5e-22 107.5 162 38.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.6e-21 106.7 166 38.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.8e-21 105.9 228 33.3
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.8e-21 105.9 166 38.0
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 4.7e-21 105.1 165 35.8
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.7e-21 105.1 173 37.0
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 6.1e-21 104.8 178 36.5
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 8.0e-21 104.4 133 45.1
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.2e-19 100.5 201 31.8
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 5.7e-19 98.2 131 40.5
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 9.8e-19 97.4 202 32.2
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.1e-17 94.0 193 30.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 2.4e-17 92.8 106 48.1
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 9.2e-17 90.9 179 34.1
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 2.7e-16 89.4 240 29.2
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 4.5e-16 88.6 150 34.7
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 5.9e-16 88.2 186 30.6
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.3e-15 86.3 150 33.3
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.9e-14 83.2 116 36.2
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 3.3e-14 82.4 151 33.8
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.1e-13 79.7 79 51.9
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.8e-13 79.3 85 45.9
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.0e-12 77.4 114 42.1
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 2.3e-12 76.3 175 30.3
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.0e-12 75.9 72 52.8
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 8.9e-12 74.3 155 28.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 8.9e-12 74.3 91 42.9
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 2.0e-11 73.2 103 39.8
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 3.4e-11 72.4 84 45.2
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 2.9e-10 69.3 160 29.4
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 1.2e-08 63.9 62 48.4
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.6e-08 63.5 66 53.0
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 5.9e-08 61.6 31 80.6
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 8.6e-07 57.8 258 24.0
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 8.6e-07 57.8 63 49.2
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.1e-06 57.4 75 38.7
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.5e-06 57.0 118 29.7
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 7.3e-06 54.7 102 33.3


User provided reference genes

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