Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.8e-310 1067.8 533 100.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.9e-293 1009.6 533 95.9
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.7e-230 802.7 496 80.8
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 4.7e-225 784.6 554 74.7
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 2.0e-220 769.2 550 72.2
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.2e-218 761.9 584 68.3
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.8e-216 756.1 563 72.1
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.3e-215 751.9 543 70.3
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.0e-212 742.7 561 67.9
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.5e-212 741.9 553 68.9
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.5e-212 741.5 565 66.4
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.7e-211 739.6 565 66.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.2e-211 739.2 558 68.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.8e-211 738.4 553 69.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.1e-210 736.9 555 71.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.9e-210 736.1 503 72.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.5e-210 735.7 557 68.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.7e-209 732.3 555 67.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.6e-209 731.9 503 72.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.0e-208 730.3 490 74.1
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.3e-208 729.2 531 69.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.2e-208 728.0 470 75.1
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 9.8e-207 723.8 558 67.9
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.3e-206 723.4 489 75.1
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.2e-206 722.6 545 69.0
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 2.2e-206 722.6 471 75.6
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.1e-205 718.8 476 74.8
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.4e-205 718.0 472 74.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 4.5e-204 714.9 558 66.3
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.3e-203 712.6 557 65.4
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.9e-202 709.5 540 67.2
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.9e-202 709.5 554 67.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.3e-202 708.8 513 70.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.3e-200 702.6 549 67.2
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.2e-199 700.3 508 69.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.5e-199 699.9 552 66.3
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.5e-199 699.9 538 67.3
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.8e-198 695.7 556 66.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 6.3e-198 694.5 548 66.4
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.4e-197 693.3 556 66.5
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 2.4e-197 692.6 554 65.7
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 3.1e-197 692.2 509 68.8
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.0e-196 689.5 563 64.3
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.7e-196 689.1 476 71.8
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 5.9e-196 688.0 530 66.0
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.3e-195 686.8 554 64.4
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.9e-194 682.9 459 74.5
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.5e-194 682.6 535 66.7
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.1e-193 679.5 549 63.9
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.6e-193 678.7 548 64.2
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-192 677.2 582 61.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.8e-192 676.4 516 65.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.8e-192 676.4 531 67.0
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.8e-192 676.4 551 63.3
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-192 676.0 469 69.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.3e-192 676.0 469 69.7
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 4.0e-192 675.2 521 66.4
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.2e-192 674.9 468 70.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 5.2e-192 674.9 474 69.0
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 8.9e-192 674.1 468 69.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 8.9e-192 674.1 468 69.7
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 8.9e-192 674.1 473 69.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.5e-191 673.3 510 68.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.0e-191 672.9 562 63.7
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 2.6e-191 672.5 529 66.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.4e-191 671.8 456 74.3
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-190 670.2 513 66.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 3.7e-190 668.7 573 62.5
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 9.2e-189 664.1 470 68.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-188 662.5 509 66.4
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 3.5e-188 662.1 534 65.9
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.0e-188 661.4 511 66.3
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.0e-187 660.6 467 69.8
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.3e-187 660.2 542 63.1
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 5.0e-187 658.3 548 61.9
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 5.0e-187 658.3 551 62.1
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.0e-187 658.3 541 61.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.5e-186 656.8 470 68.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.3e-186 655.6 533 63.6
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 7.3e-186 654.4 615 57.9
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 9.5e-186 654.1 442 73.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.6e-185 652.1 459 69.7
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 6.2e-185 651.4 483 68.1
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.1e-184 650.6 467 69.2
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.1e-184 650.6 462 69.5
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.1e-184 650.6 512 64.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.8e-184 649.8 522 64.8
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 4.0e-184 648.7 492 66.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 6.8e-184 647.9 450 70.7
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.2e-183 647.1 450 70.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-183 646.7 455 69.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.5e-183 646.7 445 71.2
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.0e-183 646.4 549 62.8
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.0e-183 646.4 538 61.2
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 5.8e-183 644.8 581 60.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.7e-182 643.3 467 67.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 3.7e-182 642.1 455 68.8
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.1e-181 638.6 476 67.9
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 7.0e-181 637.9 465 65.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 6.0e-180 634.8 523 60.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.0e-179 634.0 684 52.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 3.3e-178 629.0 598 57.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 7.3e-178 627.9 546 59.5
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.2e-177 627.1 561 58.3
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.1e-176 624.0 448 69.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.4e-176 623.6 513 61.4
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.3e-176 622.9 507 63.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 3.1e-176 622.5 540 59.8
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.9e-175 617.5 459 64.9
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.4e-173 613.6 456 65.8
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.5e-172 609.0 452 66.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.3e-171 607.1 544 61.9
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 5.6e-170 601.7 517 60.9
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.7e-164 582.8 359 80.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.5e-162 576.2 533 59.7
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.3e-162 575.9 451 61.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.1e-160 569.3 485 65.2
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.5e-154 549.7 356 76.4
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 4.9e-150 535.4 533 54.4
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.6e-143 513.1 527 53.1
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 8.4e-142 508.1 385 64.7
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 6.2e-137 491.9 353 70.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 3.4e-135 486.1 477 53.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 2.5e-133 479.9 456 52.6
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 8.7e-131 471.5 340 70.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.5e-127 460.7 356 65.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.6e-127 459.9 409 60.9
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-125 454.1 478 50.8
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.1e-124 450.3 319 69.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 5.0e-118 429.1 360 66.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.9e-116 421.8 289 71.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 5.9e-103 379.0 235 79.6
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-101 374.8 321 64.5
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.8e-97 360.1 296 65.5
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 8.3e-97 358.6 473 43.6
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.8e-96 357.5 208 79.8
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 9.1e-96 355.1 477 42.6
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 9.1e-96 355.1 343 57.4
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.2e-95 354.8 321 59.2
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 8.5e-94 348.6 208 77.9
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.1e-88 330.1 213 73.7
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.3e-86 324.7 268 61.2
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-83 315.1 209 70.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 8.9e-83 312.0 213 70.0
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.4e-80 303.9 209 75.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 7.0e-80 302.4 451 39.0
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 5.8e-74 282.7 273 59.3
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.6e-68 263.5 255 58.4
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 3.6e-68 263.5 445 35.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.2e-68 262.7 274 50.0
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.0e-62 243.8 184 70.7
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.4e-59 235.0 497 33.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.7e-54 218.0 174 60.9
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.0e-54 217.2 143 74.1
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.6e-52 210.3 277 44.8
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.8e-43 181.4 100 82.0
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.4e-41 172.6 113 65.5
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.7e-39 167.5 121 62.0
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 6.4e-33 146.4 153 52.9
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.1e-32 145.6 88 78.4
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.4e-32 145.2 301 36.5
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 4.6e-31 140.2 96 66.7
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 4.6e-31 140.2 301 34.9
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 7.9e-31 139.4 127 53.5
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.3e-29 134.0 76 81.6
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 5.6e-29 133.3 81 71.6
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.6e-28 131.7 170 47.1
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.8e-28 130.2 66 95.5
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.2e-26 125.6 102 65.7
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.5e-23 114.0 70 72.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.0e-23 113.2 64 81.2
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 3.9e-22 110.5 62 82.3
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 3.7e-20 104.0 80 65.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.1e-19 102.4 90 61.1
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.4e-19 102.1 94 55.3
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.4e-19 101.3 65 69.2
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 5.9e-18 96.7 74 56.8
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 7.6e-18 96.3 55 78.2
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 9.7e-13 79.3 51 62.7
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.6e-12 78.6 84 51.2
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-10 72.0 48 72.9
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.0e-09 69.3 113 41.6
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.8e-09 67.4 61 57.4
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.4e-08 62.8 153 35.3
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.3e-06 58.2 64 45.3


User provided reference genes

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