Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.9e-147 525.8 255 100.0
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.0e-138 494.2 255 92.9
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 7.9e-138 493.8 255 92.9
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.3e-137 493.0 255 91.8
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.8e-137 492.7 255 91.8
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.5e-136 489.6 256 92.2
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.3e-135 486.5 255 90.6
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.1e-135 485.7 255 91.8
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 2.8e-135 485.3 255 90.2
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 6.2e-135 484.2 255 90.2
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.1e-134 483.4 255 91.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.4e-134 482.3 255 89.4
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 2.0e-133 479.2 255 89.8
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.6e-133 478.8 255 89.8
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 3.4e-133 478.4 255 89.8
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 5.8e-133 477.6 255 89.0
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 5.8e-133 477.6 255 90.2
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 5.8e-133 477.6 255 89.0
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 7.6e-133 477.2 255 88.6
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 7.6e-133 477.2 255 89.8
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 7.6e-133 477.2 256 90.2
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 7.6e-133 477.2 255 89.8
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.7e-132 476.1 255 91.0
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 2.2e-132 475.7 255 89.4
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 2.9e-132 475.3 255 90.2
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 2.9e-132 475.3 255 89.0
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 3.8e-132 474.9 255 90.2
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 89.4
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 8.4e-132 473.8 255 90.6
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 8.4e-132 473.8 255 89.0
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 8.4e-132 473.8 253 89.3
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.1e-131 473.4 255 89.0
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.1e-131 473.4 255 88.2
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.1e-131 473.4 255 89.0
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.4e-131 473.0 255 88.2
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.6e-130 469.5 257 88.3
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 3.5e-130 468.4 255 87.8
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 3.5e-130 468.4 256 89.1
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 88.2
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 6.0e-130 467.6 256 88.7
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 87.8
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 7.9e-130 467.2 255 88.6
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 86.7
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 2.3e-129 465.7 254 85.8
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.3e-129 465.7 254 87.0
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 87.8
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 87.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.9e-129 464.9 254 86.6
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 5.1e-129 464.5 256 87.9
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 87.1
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 6.7e-129 464.2 256 87.9
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 6.7e-129 464.2 256 86.7
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 8.7e-129 463.8 256 87.9
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 88.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.1e-128 463.4 256 87.5
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.5e-128 463.0 253 88.5
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.5e-128 463.0 306 76.5
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 87.5
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 2.5e-128 462.2 253 87.7
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 87.5
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 86.7
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 87.5
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 3.3e-128 461.8 255 87.8
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 3.3e-128 461.8 253 87.7
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 4.3e-128 461.5 255 87.1
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 4.3e-128 461.5 255 88.2
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 87.5
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 5.6e-128 461.1 255 86.7
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 7.4e-128 460.7 253 87.7
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 7.4e-128 460.7 253 88.1
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 7.4e-128 460.7 253 88.1
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 87.5
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 85.5
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 88.2
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 88.2
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-127 459.9 253 87.7
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.3e-127 459.9 256 87.5
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.1e-127 459.1 256 85.9
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 3.7e-127 458.4 255 87.1
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 4.8e-127 458.0 256 86.7
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 85.5
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 8.2e-127 457.2 254 85.0
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 8.2e-127 457.2 256 85.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 8.2e-127 457.2 256 85.9
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.4e-126 455.7 253 85.0
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.1e-126 455.3 255 85.1
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 84.3
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 5.3e-126 454.5 256 86.3
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.3e-126 454.5 255 85.1
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 83.9
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 87.1
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 9.0e-126 453.8 253 87.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.5e-125 453.0 253 84.2
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.0e-125 452.6 253 87.0
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 83.9
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 84.7
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 4.5e-125 451.4 255 84.7
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.7e-124 449.5 252 86.9
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.7e-124 449.5 252 86.9
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.2e-124 449.1 262 84.4
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 82.4
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 83.9
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.0e-121 440.3 283 77.7
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 2.3e-121 439.1 294 75.9
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.1e-120 436.8 257 80.9
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.9e-120 436.0 257 80.5
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 3.7e-119 431.8 257 80.5
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 3.7e-119 431.8 255 82.4
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 6.3e-119 431.0 250 79.6
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.8e-118 429.5 255 82.4
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.4e-117 425.2 239 86.6
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 2.2e-116 422.5 240 80.8
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 2.9e-116 422.2 259 81.5
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 3.8e-116 421.8 239 85.8
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.9e-115 419.5 219 91.3
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 4.5e-109 398.3 229 79.9
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 3.8e-108 395.2 239 78.2
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 4.2e-107 391.7 255 77.6
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.2e-107 391.7 238 76.5
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 2.7e-106 389.0 250 72.0
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.6e-106 388.7 254 73.6
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 7.9e-106 387.5 260 75.0
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.0e-105 387.1 238 76.5
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 3.7e-103 378.6 319 63.0
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.6e-101 372.5 255 73.7
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.0e-100 370.5 232 76.7
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 8.5e-100 367.5 200 85.5
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.1e-99 367.1 240 72.5
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.6e-98 362.1 232 76.3
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 3.0e-97 359.0 257 67.7
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.9e-97 358.6 239 76.6
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 6.1e-90 334.7 249 69.1
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 2.2e-84 316.2 161 92.5
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 3.8e-84 315.5 160 92.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 8.5e-84 314.3 162 88.9
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 6.1e-82 308.1 285 61.1
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 6.1e-82 308.1 248 59.7
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 6.3e-79 298.1 171 86.0
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 4.5e-77 292.0 201 71.6
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.5e-75 286.2 158 86.1
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 4.2e-75 285.4 162 85.8
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 7.5e-72 274.6 234 53.0
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 7.3e-67 258.1 268 55.2
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.2e-58 230.7 135 80.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.1e-57 227.6 118 89.8
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.7e-55 220.3 116 90.5
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 6.0e-53 211.8 232 44.4
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 3.1e-49 199.5 121 79.3
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 3.1e-49 199.5 102 94.1
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.1e-46 188.3 100 91.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 2.7e-45 186.4 165 61.2
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 6.0e-45 185.3 211 47.4
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 2.8e-42 176.4 100 87.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.6e-37 160.6 84 85.7
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-37 160.2 89 83.1
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 2.1e-37 160.2 83 85.5
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.0e-36 156.4 83 86.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.3e-35 152.5 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.6e-35 151.4 89 78.7
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.4e-33 147.5 89 77.5
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 1.4e-33 147.5 97 78.4
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.0e-33 146.0 77 85.7
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.9e-32 141.4 81 81.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.7e-31 140.6 81 81.5
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.2e-30 136.0 75 82.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 7.1e-30 135.2 81 77.8
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.6e-29 134.0 75 81.3
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 2.7e-29 133.3 84 78.6
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.1e-28 129.0 75 78.7
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.6e-27 124.8 76 77.6
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-26 124.4 71 81.7
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 2.4e-25 120.2 82 75.6
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.6e-13 80.9 55 76.4
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 3.9e-12 76.3 42 83.3
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 3.2e-06 56.6 29 89.7


User provided reference genes

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