Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019960 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D033905 4.6e-58 227.6 111 100.0
CSS0044959 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D002777 1.0e-17 93.6 52 90.4
Lj9A353G63 Lonicera japonica HOM05D000343 ORTHO05D002777 1.0e-17 93.6 71 70.4
Rhsim11G0136600 Rhododendron simsii HOM05D000343 ORTHO05D002777 8.7e-17 90.5 52 86.5
Thecc.02G138700 Theobroma cacao HOM05D000343 ORTHO05D002777 1.5e-16 89.7 52 86.5
Duzib132G0085 Durio zibethinus HOM05D000343 ORTHO05D002777 1.9e-16 89.4 52 84.6
Gohir.A03G173900 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.9e-16 89.4 52 84.6
Gohir.D02G197100 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.9e-16 89.4 52 84.6
Gorai.005G220300 Gossypium raimondii HOM05D000343 ORTHO05D002777 1.9e-16 89.4 52 84.6
Sed0012395 Sechium edule HOM05D000343 ORTHO05D002777 1.9e-16 89.4 52 86.5
TAR628G1020 Trochodendron aralioides HOM05D000343 ORTHO05D002777 1.9e-16 89.4 52 86.5
CiPaw.06G153500 Carya illinoinensis HOM05D000343 ORTHO05D002777 2.5e-16 89.0 52 84.6
ClCG10G009250 Citrullus lanatus HOM05D000343 ORTHO05D002777 2.5e-16 89.0 52 84.6
Ah.01g022360 Amaranthus hybridus HOM05D000343 ORTHO05D002777 3.3e-16 88.6 59 76.3
COL.COLO4_24940 Corchorus olitorius HOM05D000343 ORTHO05D002777 3.3e-16 88.6 52 84.6
vmacro01824 Vaccinium macrocarpon HOM05D000343 ORTHO05D002777 3.3e-16 88.6 52 84.6
Dinv24191 Davidia involucrata HOM05D000343 ORTHO05D002777 4.3e-16 88.2 52 84.6
Potri.003G024000 Populus trichocarpa HOM05D000343 ORTHO05D002777 4.3e-16 88.2 52 80.8
arahy.Tifrunner.gnm1.ann1.KT5IG2 Arachis hypogaea HOM05D000343 ORTHO05D002777 5.7e-16 87.8 52 84.6
Cpa.g.sc42.54 Carica papaya HOM05D000343 ORTHO05D002777 9.7e-16 87.0 52 82.7
AUR62010134 Chenopodium quinoa HOM05D000343 ORTHO05D002777 9.7e-16 87.0 52 80.8
AUR62013126 Chenopodium quinoa HOM05D000343 ORTHO05D002777 9.7e-16 87.0 52 80.8
Eucgr.G00769 Eucalyptus grandis HOM05D000343 ORTHO05D002777 9.7e-16 87.0 52 82.7
Potri.001G205400 Populus trichocarpa HOM05D000343 ORTHO05D002777 9.7e-16 87.0 52 80.8
EL10Ac9g21477 Beta vulgaris HOM05D000343 ORTHO05D002777 1.3e-15 86.7 59 74.6
Cfa005601 Carpinus fangiana HOM05D000343 ORTHO05D002777 1.3e-15 86.7 52 84.6
Haze_10703 Corylus avellana HOM05D010280 ORTHO05D002777 1.3e-15 86.7 52 84.6
Manes.06G012600 Manihot esculenta HOM05D000343 ORTHO05D002777 1.3e-15 86.7 52 82.7
Nitab4.5_0002576g0010 Nicotiana tabacum HOM05D000343 ORTHO05D002777 1.3e-15 86.7 52 82.7
QL11p020866 Quercus lobata HOM05D000343 ORTHO05D002777 1.3e-15 86.7 52 82.7
Solyc01g105160.4 Solanum lycopersicum HOM05D000343 ORTHO05D002777 1.3e-15 86.7 52 82.7
Sopen01g047690 Solanum pennellii HOM05D000343 ORTHO05D002777 1.3e-15 86.7 52 82.7
GSVIVG01038742001 Vitis vinifera HOM05D000343 ORTHO05D002777 1.3e-15 86.7 52 82.7
Aqoxy6G00797 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 2.2e-15 85.9 52 78.8
CANSAT11G1697 Cannabis sativa HOM05D000343 ORTHO05D002777 2.2e-15 85.9 50 86.0
Lalb_Chr04g0256531 Lupinus albus HOM05D000343 ORTHO05D002777 2.2e-15 85.9 52 80.8
MD05G1044900 Malus domestica HOM05D000343 ORTHO05D002777 2.2e-15 85.9 52 82.7
Medtr4g094232 Medicago truncatula HOM05D000343 ORTHO05D002777 2.2e-15 85.9 50 82.0
Prupe.8G060400 Prunus persica HOM05D000343 ORTHO05D002777 2.2e-15 85.9 52 82.7
TWI59G0918 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 2.2e-15 85.9 52 80.8
Atru.chr6.1136 Acer truncatum HOM05D000343 ORTHO05D002777 2.8e-15 85.5 59 74.6
arahy.Tifrunner.gnm1.ann1.8T0CRQ Arachis hypogaea HOM05D000343 ORTHO05D002777 2.8e-15 85.5 50 86.0
Actinidia00268 Actinidia chinensis HOM05D000343 ORTHO05D002777 3.7e-15 85.1 52 82.7
Cc02_g21550 Coffea canephora HOM05D000343 ORTHO05D002777 3.7e-15 85.1 52 76.9
Lsat_1_v5_gn_9_117160 Lactuca sativa HOM05D000343 ORTHO05D002777 3.7e-15 85.1 52 80.8
Nitab4.5_0002533g0050 Nicotiana tabacum HOM05D000343 ORTHO05D002777 3.7e-15 85.1 52 80.8
Ca_18353_v3 Cicer arietinum L. HOM05D000343 ORTHO05D002777 4.8e-15 84.7 50 82.0
ECA240G1089 Erigeron canadensis HOM05D000343 ORTHO05D002777 4.8e-15 84.7 52 80.8
Psat7g098280 Pisum sativum HOM05D000343 ORTHO05D002777 4.8e-15 84.7 50 82.0
Sc22g0003160 Simmondsia chinensis HOM05D000343 ORTHO05D002777 4.8e-15 84.7 52 80.8
TPR.G10457 Trifolium pratense HOM05D000343 ORTHO05D002777 4.8e-15 84.7 50 82.0
CAN.G523.72 Capsicum annuum HOM05D000343 ORTHO05D002777 6.3e-15 84.3 48 87.5
MBI02_g08720_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D002777 6.3e-15 84.3 50 84.0
Peaxi162Scf00001g01039 Petunia axillaris HOM05D000343 ORTHO05D002777 6.3e-15 84.3 52 80.8
SGA_v2.0_scaffold14G07121 Striga asiatica HOM05D000343 ORTHO05D002777 8.2e-15 84.0 52 76.9
Lalb_Chr10g0097841 Lupinus albus HOM05D000343 ORTHO05D002777 1.1e-14 83.6 52 78.8
Hund00062 Selenicereus undatus HOM05D000343 ORTHO05D002777 1.1e-14 83.6 52 78.8
ATR0118G027 Amborella trichopoda HOM05D000343 ORTHO05D002777 1.4e-14 83.2 52 76.9
CsaV3_4G009440 Cucumis sativus L. HOM05D000343 ORTHO05D002777 1.4e-14 83.2 52 78.8
Migut.B00610 Erythranthe guttata HOM05D000343 ORTHO05D002777 1.4e-14 83.2 52 75.0
MELO3C019011.2 Cucumis melo HOM05D000343 ORTHO05D002777 1.8e-14 82.8 52 78.8
RcHm_v2.0_Chr6g0271821 Rosa chinensis HOM05D000343 ORTHO05D002777 1.8e-14 82.8 52 78.8
Lj4g0019087 Lotus japonicus HOM05D000343 ORTHO05D002777 2.4e-14 82.4 48 85.4
PGR042G3206 Punica granatum HOM05D000343 ORTHO05D002777 2.4e-14 82.4 52 78.8
Hma1.2p1_0704F.1_g206650 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 3.1e-14 82.0 52 76.9
FAN24G2206 Fragaria x ananassa HOM05D000343 ORTHO05D002777 4.1e-14 81.6 55 72.7
HanXRQChr03g0066901 Helianthus annuus HOM05D000343 ORTHO05D002777 4.1e-14 81.6 52 78.8
HanXRQChr17g0556951 Helianthus annuus HOM05D000343 ORTHO05D002777 4.1e-14 81.6 52 78.8
Phvul.002G208800 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 4.1e-14 81.6 52 76.9
unitig_749.g14154 Utricularia gibba HOM05D000343 ORTHO05D002777 4.1e-14 81.6 52 75.0
SalBow5G0065 Salvia bowleyana HOM05D000343 ORTHO05D002777 6.9e-14 80.9 52 73.1
SalBow5G1460 Salvia bowleyana HOM05D000343 ORTHO05D002777 6.9e-14 80.9 52 73.1
FAN15G3294 Fragaria x ananassa HOM05D000343 ORTHO05D002777 9.0e-14 80.5 55 70.9
PSO541G1663 Papaver somniferum HOM05D000343 ORTHO05D002777 9.0e-14 80.5 52 71.2
PSO781G0273 Papaver somniferum HOM05D000343 ORTHO05D002777 9.0e-14 80.5 52 71.2
THA.LOC104804410 Tarenaya hassleriana HOM05D000343 ORTHO05D002777 9.0e-14 80.5 50 82.0
Aa31sc280G30 Aethionema arabicum HOM05D000343 ORTHO05D002777 1.2e-13 80.1 52 76.9
Glyma.05G117400 Glycine max HOM05D000343 ORTHO05D002777 1.2e-13 80.1 50 80.0
Glyma.08G072400 Glycine max HOM05D000343 ORTHO05D002777 1.2e-13 80.1 52 76.9
Oeu000247.4 Olea europaea HOM05D000343 ORTHO05D002777 1.2e-13 80.1 52 75.0
Thhalv10024339m.g Eutrema salsugineum HOM05D000343 ORTHO05D002777 1.5e-13 79.7 52 75.0
Actinidia23995 Actinidia chinensis HOM05D000343 ORTHO05D002777 2.0e-13 79.3 52 76.9
Carub.0007s0693 Capsella rubella HOM05D000343 ORTHO05D002777 2.0e-13 79.3 52 75.0
FvH4_2g11930 Fragaria vesca HOM05D000343 ORTHO05D002777 2.0e-13 79.3 52 75.0
SEGI_13611 Sequoiadendron giganteum HOM05D000343 ORTHO05D002777 2.0e-13 79.3 52 71.2
CDE12G0847 Ceratophyllum demersum HOM05D000343 ORTHO05D002777 4.5e-13 78.2 59 67.8
Sp7g31260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 4.5e-13 78.2 50 78.0
FAN20G2112 Fragaria x ananassa HOM05D000343 ORTHO05D002777 5.9e-13 77.8 52 73.1
FAN27G2388 Fragaria x ananassa HOM05D000343 ORTHO05D002777 5.9e-13 77.8 52 73.1
VMungo0251G3773 Vigna mungo HOM05D000343 ORTHO05D033905 5.9e-13 77.8 50 78.0
AL7G18010 Arabidopsis lyrata HOM05D000343 ORTHO05D002777 7.6e-13 77.4 50 76.0
AT4G33520 Arabidopsis thaliana HOM05D000343 ORTHO05D002777 7.6e-13 77.4 50 76.0
BcaC09g52169 Brassica carinata HOM05D000343 ORTHO05D002777 1.0e-12 77.0 50 76.0
A01p04740 Brassica napus HOM05D000343 ORTHO05D002777 1.0e-12 77.0 50 76.0
C01p05150 Brassica napus HOM05D000343 ORTHO05D002777 1.0e-12 77.0 50 76.0
BolC1t00495H Brassica oleracea HOM05D000343 ORTHO05D002777 1.0e-12 77.0 50 76.0
BraA01t00457Z Brassica rapa HOM05D000343 ORTHO05D002777 1.0e-12 77.0 50 76.0
Zm00001eb199150 Zea mays HOM05D000343 ORTHO05D002777 2.2e-12 75.9 48 77.1
Mapoly0071s0034 Marchantia polymorpha HOM05D000343 ORTHO05D002777 5.0e-12 74.7 48 70.8
CBR_g20392 Chara braunii HOM05D000343 ORTHO05D002777 1.9e-11 72.8 47 70.2
AagrBONN_evm.TU.Sc2ySwM_117.4043 Anthoceros agrestis HOM05D000208 ORTHO05D000130 4.2e-11 71.6 48 70.8
Pp3c22_10860 Physcomitrium patens HOM05D000343 ORTHO05D002777 1.6e-10 69.7 48 66.7
Pp3c18_10710 Physcomitrium patens HOM05D000343 ORTHO05D002777 2.7e-10 68.9 48 64.6
SMO011G0027 Selaginella moellendorffii HOM05D000343 ORTHO05D002777 6.7e-09 64.3 46 67.4
HPP92_002330 Vanilla planifolia HOM05D000343 ORTHO05D002777 1.1e-08 63.5 35 82.9
Mapoly0079s0021 Marchantia polymorpha HOM05D000343 ORTHO05D002777 2.2e-07 59.3 47 61.7
VMungo1309G2720 Vigna mungo HOM05D000343 ORTHO05D002777 2.8e-07 58.9 76 44.7
arahy.Tifrunner.gnm1.ann1.ALH963 Arachis hypogaea HOM05D000343 ORTHO05D002777 4.8e-07 58.2 76 44.7
Glyma.06G056300 Glycine max HOM05D000343 ORTHO05D002777 4.8e-07 58.2 76 44.7
Lj1g0013438 Lotus japonicus HOM05D000343 ORTHO05D002777 4.8e-07 58.2 76 44.7
Phvul.009G082400 Phaseolus vulgaris HOM05D000343 ORTHO05D002777 4.8e-07 58.2 47 61.7
Cre10.g424775 Chlamydomonas reinhardtii HOM05D000343 ORTHO05D002777 6.3e-07 57.8 47 55.3
Haze_26716 Corylus avellana HOM05D000343 ORTHO05D164814 1.1e-06 57.0 53 45.3
Medtr3g105190 Medicago truncatula HOM05D000343 ORTHO05D002777 1.1e-06 57.0 76 44.7
Nn8g38654 Nelumbo nucifera HOM05D000343 ORTHO05D002777 1.1e-06 57.0 76 42.1
Psat5g030200 Pisum sativum HOM05D000343 ORTHO05D002777 1.1e-06 57.0 76 44.7
Sp6g23260 Schrenkiella parvula HOM05D000343 ORTHO05D002777 1.1e-06 57.0 76 43.4
TPR.G3522 Trifolium pratense HOM05D000343 ORTHO05D002777 1.1e-06 57.0 76 44.7
Pp3c19_14977 Physcomitrium patens HOM05D000343 ORTHO05D033905 1.4e-06 56.6 48 58.3
CANSAT25G0648 Cannabis sativa HOM05D000343 ORTHO05D002777 1.8e-06 56.2 77 41.6
CiPaw.15G091500 Carya illinoinensis HOM05D000343 ORTHO05D002777 1.8e-06 56.2 76 42.1
Gohir.A06G083200 Gossypium hirsutum HOM05D000343 ORTHO05D002777 1.8e-06 56.2 76 42.1
PGR031G2498 Punica granatum HOM05D000343 ORTHO05D002777 1.8e-06 56.2 76 40.8
COL.COLO4_21144 Corchorus olitorius HOM05D000343 ORTHO05D002777 2.4e-06 55.8 76 42.1
Glyma.04G056067 Glycine max HOM05D000343 ORTHO05D002777 2.4e-06 55.8 76 43.4
Lj7C220T7 Lonicera japonica HOM05D000343 ORTHO05D002777 2.4e-06 55.8 76 42.1
Lalb_Chr23g0267981 Lupinus albus HOM05D000343 ORTHO05D002777 2.4e-06 55.8 76 43.4
Thecc.09G063900 Theobroma cacao HOM05D000343 ORTHO05D002777 2.4e-06 55.8 76 42.1
Cpa.g.sc126.19 Carica papaya HOM05D000343 ORTHO05D002777 3.1e-06 55.5 76 42.1
Duzib150G1472 Durio zibethinus HOM05D000343 ORTHO05D002777 3.1e-06 55.5 76 42.1
Eucgr.C00731 Eucalyptus grandis HOM05D000343 ORTHO05D002777 3.1e-06 55.5 76 40.8
TWI32G1354 Tripterygium wilfordii HOM05D000343 ORTHO05D002777 3.1e-06 55.5 76 40.8
Phvul.010G023900 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 4.1e-06 55.1 54 51.9
VMungo0331G2055 Vigna mungo HOM05D000343 ORTHO05D000975 4.1e-06 55.1 54 51.9
Aa31LG1G13490 Aethionema arabicum HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 42.1
A10p18790 Brassica napus HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 40.8
C09p54810 Brassica napus HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 40.8
BolC9t58341H Brassica oleracea HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 40.8
BraA10t43959Z Brassica rapa HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 40.8
ECA240G4338 Erigeron canadensis HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 40.8
Migut.A00072 Erythranthe guttata HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 39.5
Glyma.16G088300 Glycine max HOM05D000343 ORTHO05D000975 5.3e-06 54.7 54 51.9
HanXRQChr03g0065671 Helianthus annuus HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 40.8
Lj3g0024880 Lotus japonicus HOM05D000343 ORTHO05D000975 5.3e-06 54.7 54 50.0
Lalb_Chr07g0194361 Lupinus albus HOM05D000343 ORTHO05D000975 5.3e-06 54.7 54 51.9
Sed0004786 Sechium edule HOM05D000343 ORTHO05D002777 5.3e-06 54.7 76 39.5
Atru.chr7.1842 Acer truncatum HOM05D000343 ORTHO05D002777 6.9e-06 54.3 76 39.5
ATR0605G132 Amborella trichopoda HOM05D000343 ORTHO05D000975 6.9e-06 54.3 52 51.9
Aqoxy7G03994 Aquilegia oxysepala HOM05D000343 ORTHO05D002777 6.9e-06 54.3 76 40.8
arahy.Tifrunner.gnm1.ann1.1HUL85 Arachis hypogaea HOM05D000343 ORTHO05D000975 6.9e-06 54.3 44 59.1
arahy.Tifrunner.gnm1.ann1.NB9ZER Arachis hypogaea HOM05D000343 ORTHO05D000975 6.9e-06 54.3 44 59.1
BcaB08g36468 Brassica carinata HOM05D000343 ORTHO05D002777 6.9e-06 54.3 76 40.8
Dinv22939 Davidia involucrata HOM05D000343 ORTHO05D002777 6.9e-06 54.3 76 40.8
ECA248G1604 Erigeron canadensis HOM05D000343 ORTHO05D000975 6.9e-06 54.3 53 49.1
Hma1.2p1_1980F.1_g309870 Hydrangea macrophylla HOM05D000343 ORTHO05D002777 6.9e-06 54.3 76 40.8
SGA_v2.0_scaffold20G09154 Striga asiatica HOM05D000343 ORTHO05D002777 6.9e-06 54.3 76 39.5
AL2G11790 Arabidopsis lyrata HOM05D000343 ORTHO05D000975 9.1e-06 53.9 45 57.8
AT1G63440 Arabidopsis thaliana HOM05D000343 ORTHO05D000975 9.1e-06 53.9 45 57.8
A09p13650 Brassica napus HOM05D000343 ORTHO05D000975 9.1e-06 53.9 45 57.8
C09p16320 Brassica napus HOM05D000343 ORTHO05D000975 9.1e-06 53.9 45 57.8
BolC9t54543H Brassica oleracea HOM05D000343 ORTHO05D000975 9.1e-06 53.9 45 57.8
BraA09t37018Z Brassica rapa HOM05D000343 ORTHO05D000975 9.1e-06 53.9 45 57.8
Carub.0002s0144 Capsella rubella HOM05D000343 ORTHO05D000975 9.1e-06 53.9 45 57.8
CAN.G774.9 Capsicum annuum HOM05D000343 ORTHO05D000975 9.1e-06 53.9 51 51.0
Lalb_Chr09g0321041 Lupinus albus HOM05D000343 ORTHO05D000975 9.1e-06 53.9 44 59.1
Psat4g204720 Pisum sativum HOM05D000343 ORTHO05D000975 9.1e-06 53.9 52 51.9
Potri.018G047800 Populus trichocarpa HOM05D000343 ORTHO05D002777 9.1e-06 53.9 76 40.8
SalBow3G0747 Salvia bowleyana HOM05D000343 ORTHO05D000975 9.1e-06 53.9 52 50.0


User provided reference genes

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