Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.4e-34 148.3 74 100.0
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.9e-12 75.5 39 87.2
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 4.3e-12 74.3 44 81.8
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 1.3e-11 72.8 44 79.5
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.1e-11 72.0 68 57.4
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 6.2e-11 70.5 44 77.3
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 1.1e-10 69.7 68 55.9
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 1.4e-10 69.3 44 77.3
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 1.8e-10 68.9 44 77.3
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 4.0e-10 67.8 68 54.4
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 4.0e-10 67.8 41 80.5
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 5.3e-10 67.4 68 54.4
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 5.3e-10 67.4 68 54.4
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 5.3e-10 67.4 68 54.4
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 5.3e-10 67.4 68 54.4
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 5.3e-10 67.4 68 54.4
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 5.3e-10 67.4 68 54.4
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 5.3e-10 67.4 44 72.7
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 5.3e-10 67.4 68 54.4
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 6.9e-10 67.0 68 52.9
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 6.9e-10 67.0 68 52.9
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 6.9e-10 67.0 68 52.9
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 6.9e-10 67.0 68 52.9
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 6.9e-10 67.0 68 54.4
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 9.0e-10 66.6 68 54.4
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 9.0e-10 66.6 68 52.9
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 9.0e-10 66.6 68 54.4
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 1.2e-09 66.2 68 54.4
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 1.2e-09 66.2 68 52.9
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.2e-09 66.2 68 52.9
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 1.5e-09 65.9 43 74.4
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 52.9
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 54.4
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 54.4
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 54.4
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 52.9
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 52.9
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 52.9
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 1.5e-09 65.9 68 54.4
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 2.0e-09 65.5 66 57.6
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 2.0e-09 65.5 44 72.7
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 2.0e-09 65.5 68 52.9
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 2.0e-09 65.5 68 52.9
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 2.6e-09 65.1 68 52.9
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 2.6e-09 65.1 68 54.4
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 2.6e-09 65.1 68 52.9
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.6e-09 65.1 68 52.9
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 3.4e-09 64.7 66 53.0
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 3.4e-09 64.7 73 52.1
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.4e-09 64.7 68 52.9
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 4.5e-09 64.3 66 51.5
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 4.5e-09 64.3 68 52.9
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 4.5e-09 64.3 68 52.9
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 4.5e-09 64.3 68 52.9
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 4.5e-09 64.3 68 52.9
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 4.5e-09 64.3 68 52.9
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 4.5e-09 64.3 33 87.9
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 5.8e-09 63.9 68 52.9
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.8e-09 63.9 68 52.9
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 7.6e-09 63.5 68 52.9
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 7.6e-09 63.5 68 51.5
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.0e-08 63.2 42 73.8
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 1.0e-08 63.2 68 51.5
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 1.0e-08 63.2 68 52.9
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 1.0e-08 63.2 68 51.5
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 1.3e-08 62.8 68 51.5
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 1.3e-08 62.8 68 51.5
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.3e-08 62.8 44 72.7
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 1.7e-08 62.4 78 48.7
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.7e-08 62.4 68 51.5
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 1.7e-08 62.4 78 47.4
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.2e-08 62.0 68 51.5
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 2.9e-08 61.6 68 51.5
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 2.9e-08 61.6 68 50.0
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 3.8e-08 61.2 68 51.5
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 3.8e-08 61.2 68 51.5
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.8e-08 61.2 66 51.5
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.9e-08 60.8 68 51.5
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.9e-08 60.8 68 51.5
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 6.5e-08 60.5 44 68.2
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 6.5e-08 60.5 44 68.2
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 6.5e-08 60.5 44 68.2
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 6.5e-08 60.5 68 50.0
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 6.5e-08 60.5 43 72.1
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 6.5e-08 60.5 30 90.0
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 1.1e-07 59.7 68 51.5
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 1.1e-07 59.7 44 68.2
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 1.9e-07 58.9 43 67.4
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 1.9e-07 58.9 41 68.3
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 2.5e-07 58.5 44 65.9
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 2.5e-07 58.5 68 50.0
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 2.5e-07 58.5 77 46.8
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 2.5e-07 58.5 68 50.0
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 2.5e-07 58.5 68 50.0
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 2.5e-07 58.5 68 50.0
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 2.5e-07 58.5 68 50.0
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 3.2e-07 58.2 43 67.4
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 3.2e-07 58.2 43 67.4
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 3.2e-07 58.2 43 67.4
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 3.2e-07 58.2 43 67.4
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 3.2e-07 58.2 43 67.4
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 3.2e-07 58.2 68 50.0
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 3.2e-07 58.2 38 71.1
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 4.2e-07 57.8 63 50.8
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 4.2e-07 57.8 68 50.0
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 4.2e-07 57.8 68 50.0
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 4.2e-07 57.8 68 50.0
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 4.2e-07 57.8 41 70.7
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 5.5e-07 57.4 68 48.5
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.1e-07 57.0 39 76.9
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 7.1e-07 57.0 43 67.4
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 7.1e-07 57.0 39 69.2
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 9.3e-07 56.6 26 100.0
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 9.3e-07 56.6 55 61.8
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 1.2e-06 56.2 43 65.1
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 1.6e-06 55.8 43 65.1
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 1.6e-06 55.8 43 65.1
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 1.6e-06 55.8 43 65.1
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 1.6e-06 55.8 43 65.1
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 1.6e-06 55.8 43 65.1
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 2.1e-06 55.5 68 47.1
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 3.5e-06 54.7 87 41.4
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 4.6e-06 54.3 44 61.4
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 4.6e-06 54.3 44 61.4
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 4.6e-06 54.3 44 61.4
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 4.6e-06 54.3 44 61.4
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 4.6e-06 54.3 44 61.4
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 4.6e-06 54.3 41 68.3
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 7.9e-06 53.5 36 66.7


User provided reference genes

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