Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1882.8 939 100.0
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1872.4 939 99.6
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1603.2 962 84.0
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1528.1 965 80.7
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1491.1 1023 75.5
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1441.8 909 78.9
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1423.7 932 76.6
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1420.6 933 76.4
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1419.8 962 76.5
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1399.4 913 76.0
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1391.3 914 76.5
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1390.2 914 76.4
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1385.9 929 74.8
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1385.2 908 76.0
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1382.9 946 74.0
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1382.5 946 74.0
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1379.8 913 75.6
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1379.0 966 72.8
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1378.2 913 76.0
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1376.7 910 75.6
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1375.9 914 75.3
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1370.9 910 76.2
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1368.6 898 76.2
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1367.4 964 72.4
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1366.3 910 74.8
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1365.9 917 75.8
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1360.1 920 74.9
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1359.4 923 74.4
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1358.6 990 70.6
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1358.2 955 72.0
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1357.4 914 74.7
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1357.4 964 72.0
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1352.8 960 72.1
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1351.7 907 75.2
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1346.6 890 75.7
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1345.5 893 76.1
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1344.7 888 75.2
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1344.3 957 73.0
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1344.3 936 74.0
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1342.8 960 72.2
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1341.6 964 71.7
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1340.5 912 73.8
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1339.7 962 71.9
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1338.9 930 74.0
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1338.6 903 74.2
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1333.2 962 71.5
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1333.2 889 74.7
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1330.5 906 74.0
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1328.9 964 71.9
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1325.5 962 71.0
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1321.2 967 70.2
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1320.4 965 71.1
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1318.9 961 70.2
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1318.5 959 69.7
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1314.7 908 72.9
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1312.7 961 69.6
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1305.4 914 73.1
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1291.9 1009 66.5
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1289.6 924 71.4
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1288.1 877 73.9
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1278.8 909 71.3
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1278.1 908 72.4
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1274.2 951 70.1
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1270.4 898 72.7
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1243.4 813 76.9
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1243.0 815 77.2
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1238.4 843 74.0
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1226.1 887 69.1
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1216.1 912 69.3
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1211.1 879 69.9
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1209.5 929 67.5
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1207.2 910 67.8
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1200.3 913 66.7
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1198.7 885 67.8
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1195.6 959 65.7
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1194.1 876 68.7
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1192.9 914 66.0
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1189.9 884 68.0
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1189.1 880 68.4
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1179.9 884 67.8
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1170.2 901 65.6
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1163.7 907 65.6
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1157.5 887 65.3
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1154.4 891 65.0
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1153.7 910 66.8
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1151.7 863 67.6
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1146.3 893 64.9
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1137.9 888 64.4
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1134.8 892 64.8
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1130.9 903 64.0
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1127.5 887 64.5
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1119.4 922 65.1
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1087.4 910 62.4
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1079.3 808 67.3
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.9e-290 1002.7 767 68.1
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 7.5e-287 990.7 645 77.7
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 3.7e-286 988.4 634 79.3
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 8.3e-286 987.3 714 68.5
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.7e-278 963.0 610 79.0
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 5.8e-271 937.9 879 54.3
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 4.8e-257 891.7 930 50.5
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 2.3e-251 872.8 602 73.8
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 6.2e-249 864.8 684 68.0
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.1e-216 755.7 514 74.1
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 8.0e-212 741.5 876 49.8
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 4.0e-203 712.6 912 45.8
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 6.6e-198 695.3 559 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 3.6e-196 689.5 627 55.8
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 1.1e-189 667.9 724 49.2
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 9.5e-189 664.8 445 75.1
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 2.0e-178 630.6 534 61.0
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 2.7e-175 620.2 400 75.2
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 5.6e-173 612.5 417 73.9
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 2.6e-146 523.9 337 77.2
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 7.2e-112 409.5 274 73.7
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.6e-111 407.1 266 77.4
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 7.7e-106 389.4 282 68.4
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 3.1e-91 340.9 216 79.2
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.2e-82 312.4 338 54.4
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.9e-80 305.1 238 63.4
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 1.5e-56 225.7 217 50.2
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.0e-53 215.3 172 64.5
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 1.9e-48 198.7 248 48.0
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.0e-46 191.0 282 45.7
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 6.2e-39 167.2 222 50.0
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 6.4e-36 157.1 98 79.6
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-24 117.5 272 33.5
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 3.7e-23 114.8 82 68.3
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 2.4e-22 112.1 59 86.4
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.6e-18 99.4 58 84.5
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 9.6e-16 90.1 69 68.1
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 4.8e-15 87.8 416 24.0
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 1.0e-09 70.1 261 27.6
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 1.6e-07 62.8 51 66.7
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.8e-07 61.2 113 39.8


User provided reference genes

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